PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information? help Back to Top

TF ID

IGS.gm_20_00100

Common Name

CHLNCDRAFT_138351

Organism

Taxonomic ID

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 152aa MW: 16564.9 Da PI: 8.2157

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_20_00100	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.2	1.1e-11	21	117	1	88
EEEE-..-HHHHT....T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE.....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlks....grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy...rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+kvl+ dv +r+v+pk+ +e+h +++++ ++ l +ed++g++++++l+y + +sgr+++ +G+++ + +L++gD +v ++ IGS.gm_20_00100 21 FEKVLSATDVRGGavpgDRVVMPKRNTETHlpELESQAGVVLDVEDLEGQRYRLRLTYwtnSPSSGRMYILEGTSQLLQHYRLRTGDALVVART 114 778888888877777779************8888899*************9965555566677778****************9966 PP SSS CS B3 86 grs 88 g+ IGS.gm_20_00100 115 GDG 117 643 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.9E-21	18	136	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.50E-17	19	121	No hit	No description
SuperFamily	SSF101936	5.62E-15	19	122	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	2.5E-7	37	117	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 152 aa Download sequence Send to blast
MPPTRDEVDA QLEELGARRL FEKVLSATDV RGGAVPGDRV VMPKRNTETH LPELESQAGV 60 VLDVEDLEGQ RYRLRLTYWT NSPSSGRMYI LEGTSQLLQH YRLRTGDALV VARTGDGGLL 120 MAGQRKQASR AGATCSRADC INKLGLALTL L*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5yzy_C	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
5yzz_C	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
5z00_C	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
5z00_G	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
5z00_K	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
5z00_M	3e-19	20	129	22	125	B3 domain-containing transcription repressor VAL1
6fas_A	2e-19	20	129	8	111	B3 domain-containing transcription repressor VAL1
6fas_B	2e-19	20	129	8	111	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844856.1	1e-106	hypothetical protein CHLNCDRAFT_138351
TrEMBL	E1ZMV1	1e-105	E1ZMV1_CHLVA; Uncharacterized protein
STRING	XP_005844856.1	1e-106	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4113	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30470.1	8e-20	high-level expression of sugar-inducible gene 2

Link Out ? help Back to Top
Entrez Gene	17352251

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]