PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_21_00076

Common Name

CHLNCDRAFT_138597

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

Protein Properties

Length: 1485aa MW: 158593 Da PI: 6.3982

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_21_00076	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.4	2.7e-13	10	96	2	87
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE......EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy....rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 kvl+ s+v++++ l +p +f + e++++ l++e g+ We +++ +kk++++ +t+GW FvkangL+egD v F+++ IGS.gm_21_00076 10 TKVLSESYVSRNAPLGFPARFHRVWFT---ETTDVLLKNEAGEAWEGRVTKkaadEKKPDSCNITGGWGIFVKANGLQEGDEVKFQHQPA 96 699****************966653...4568***********888999999999***********************8733 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	5.3E-12	7	94	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	11.956	9	112	IPR003340	B3 DNA binding domain
SMART	SM01019	0.0093	9	112	IPR003340	B3 DNA binding domain
CDD	cd10017	7.50E-15	9	98	No hit	No description
Gene3D	G3DSA:2.40.330.10	5.9E-11	9	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.6E-11	10	99	IPR003340	B3 DNA binding domain
SuperFamily	SSF51905	1.07E-44	1021	1280	IPR023753	FAD/NAD(P)-binding domain
Gene3D	G3DSA:3.40.50.720	3.9E-15	1022	1073	IPR016040	NAD(P)-binding domain
Pfam	PF01593	1.2E-18	1031	1165	IPR002937	Amine oxidase
Gene3D	G3DSA:3.40.50.720	3.9E-15	1159	1174	IPR016040	NAD(P)-binding domain
Gene3D	G3DSA:3.90.660.10	1.2E-42	1181	1366	No hit	No description
Pfam	PF01593	1.3E-29	1225	1433	IPR002937	Amine oxidase
SuperFamily	SSF54373	1.11E-21	1260	1363	No hit	No description
SuperFamily	SSF51905	1.07E-44	1397	1436	IPR023753	FAD/NAD(P)-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0055114	Biological Process	oxidation-reduction process
GO:0003677	Molecular Function	DNA binding
GO:0016491	Molecular Function	oxidoreductase activity

Sequence ? help Back to Top
Protein Sequence Length: 1485 aa Download sequence Send to blast
MAGGDELEYT KVLSESYVSR NAPLGFPARF HRVWFTETTD VLLKNEAGEA WEGRVTKKAA 60 DEKKPDSCNI TGGWGIFVKA NGLQEGDEVK FQHQPATSSS KAAIRITVLS RGNTNEAAAK 120 RQAAKRQAAQ LGKPGRKPAS PAAARTPGRK RPRQEARPPE HPAQQQAAQP RRGPGTAAAA 180 AAALAARAAA AVAAEQPPTL AAGEREYIRH SRQQPEQQQQ QQGVEEAAAW QAAEQEAAGR 240 EQQEEEAVLQ EEQPAEQQVK SPYSGCYDLP PGESSDDAAD APAAPQAAAR APAAAAAAVP 300 SRGEEAERGA KRQRPAAAAA AGVVAAAAAS VQPLEAASHQ AERDAGAGGS GGEEGDPREG 360 GLAAGAPKLT AGALVGRTVL LRCPAGPALH SRREWVAGRV LEPVGSRPGM LVVQLVGANS 420 QQQQHQEGEE QQQQQQQQQE EGQPAAAAPA GGIEELSFFN PSDVAAQLPE GLIGWTVRKH 480 FPGFGPRKWI GKVDGFVAEC QLYHITYEDG DGEEAELHEL LPVLRGPHRA QNGARLAPAG 540 APSRPAAGGK KRGRPPKQAP PGEPQAAAAA VAAAGRGRRV AAAAGADAAA GGAAWVQVEA 600 TPVAIAEAEE GGFYAAGGAG HDRHVLAFDR EAGMARPVGP WIVDRHKGTV LGRAARLDKR 660 HLPDRQLPDG GEEGRAYRSP CVPGWLGVSI VESDEEQVWH PGYKGQYHPV FWDSHCAVKH 720 KVPSAYTETV EEAALLYDRM ALSYFGSGAD TNFPPTEELL AELGGQEEGA RSQVIPLAAR 780 LLFMEQSIPD EAIATDVSQE EWDEWESYIQ DNHLLRRPAA DAPRQLAARL KWLLQQASAA 840 GLPGPLGTPL VHPSALLPPY RGAAMRRFMA ACDACTEVGT NKDHYAPDAA HCFACASTVK 900 KGGGASFRHS CNKLSALIRE LEVAVISQDA LSSFASGEGE EEAAAAADDE QQGLDAKLRL 960 WRTGCPDGGQ SDDAREQAAD ARRQRQRGQA GGAALPRRGA RGGRGGRGAA VRQEKPVPPG 1020 APRVIVIGGG VAGLKAAADL QRSGAQVTVL EARDRLGGRI HTHQLVAGEV RRPVDLGATF 1080 ICGTSRRPPV NPMLEFAVDV LGLSLRPKRR DGPAATTLYD KQGLPIPDEQ LEEAEEKYAE 1140 LMEQLLDRGE KARAGSTETL ANAIRSILED LQLEAMERQI VEAYLVDLYV TTTDRMSLKG 1200 SVSSGYDGDH ELVVGGFGQE EPLWAHAVVC TLPLGCLQKQ TVAFQPPLPA YKQQAIDGLG 1260 MGTENRVAML FEEVFWPEGP HFLRPLHGRY TFSNLHALGV ENVLCAWVRP QDIDAYEAMS 1320 DGEVLADVEA ALREMFPNTF RKPMAHTITR WQQDPYCYGA YSFVPPHGRK AYYEWMSYPV 1380 SGDAAADAKA VEQRGLHVTA QTRLWFAGEA SSKDDAYTAH GAFVTGHHQA IRIKRWWRHH 1440 HEQLERSQRE AAAAGAAAAQ ARQLASPLRR RRGGCVEAGG ASQQ*

Sequence ? help Back to Top

Protein Sequence Length: 1485 aa Download sequence Send to blast

MAGGDELEYT KVLSESYVSR NAPLGFPARF HRVWFTETTD VLLKNEAGEA WEGRVTKKAA  60
DEKKPDSCNI TGGWGIFVKA NGLQEGDEVK FQHQPATSSS KAAIRITVLS RGNTNEAAAK  120
RQAAKRQAAQ LGKPGRKPAS PAAARTPGRK RPRQEARPPE HPAQQQAAQP RRGPGTAAAA  180
AAALAARAAA AVAAEQPPTL AAGEREYIRH SRQQPEQQQQ QQGVEEAAAW QAAEQEAAGR  240
EQQEEEAVLQ EEQPAEQQVK SPYSGCYDLP PGESSDDAAD APAAPQAAAR APAAAAAAVP  300
SRGEEAERGA KRQRPAAAAA AGVVAAAAAS VQPLEAASHQ AERDAGAGGS GGEEGDPREG  360
GLAAGAPKLT AGALVGRTVL LRCPAGPALH SRREWVAGRV LEPVGSRPGM LVVQLVGANS  420
QQQQHQEGEE QQQQQQQQQE EGQPAAAAPA GGIEELSFFN PSDVAAQLPE GLIGWTVRKH  480
FPGFGPRKWI GKVDGFVAEC QLYHITYEDG DGEEAELHEL LPVLRGPHRA QNGARLAPAG  540
APSRPAAGGK KRGRPPKQAP PGEPQAAAAA VAAAGRGRRV AAAAGADAAA GGAAWVQVEA  600
TPVAIAEAEE GGFYAAGGAG HDRHVLAFDR EAGMARPVGP WIVDRHKGTV LGRAARLDKR  660
HLPDRQLPDG GEEGRAYRSP CVPGWLGVSI VESDEEQVWH PGYKGQYHPV FWDSHCAVKH  720
KVPSAYTETV EEAALLYDRM ALSYFGSGAD TNFPPTEELL AELGGQEEGA RSQVIPLAAR  780
LLFMEQSIPD EAIATDVSQE EWDEWESYIQ DNHLLRRPAA DAPRQLAARL KWLLQQASAA  840
GLPGPLGTPL VHPSALLPPY RGAAMRRFMA ACDACTEVGT NKDHYAPDAA HCFACASTVK  900
KGGGASFRHS CNKLSALIRE LEVAVISQDA LSSFASGEGE EEAAAAADDE QQGLDAKLRL  960
WRTGCPDGGQ SDDAREQAAD ARRQRQRGQA GGAALPRRGA RGGRGGRGAA VRQEKPVPPG  1020
APRVIVIGGG VAGLKAAADL QRSGAQVTVL EARDRLGGRI HTHQLVAGEV RRPVDLGATF  1080
ICGTSRRPPV NPMLEFAVDV LGLSLRPKRR DGPAATTLYD KQGLPIPDEQ LEEAEEKYAE  1140
LMEQLLDRGE KARAGSTETL ANAIRSILED LQLEAMERQI VEAYLVDLYV TTTDRMSLKG  1200
SVSSGYDGDH ELVVGGFGQE EPLWAHAVVC TLPLGCLQKQ TVAFQPPLPA YKQQAIDGLG  1260
MGTENRVAML FEEVFWPEGP HFLRPLHGRY TFSNLHALGV ENVLCAWVRP QDIDAYEAMS  1320
DGEVLADVEA ALREMFPNTF RKPMAHTITR WQQDPYCYGA YSFVPPHGRK AYYEWMSYPV  1380
SGDAAADAKA VEQRGLHVTA QTRLWFAGEA SSKDDAYTAH GAFVTGHHQA IRIKRWWRHH  1440
HEQLERSQRE AAAAGAAAAQ ARQLASPLRR RRGGCVEAGG ASQQ*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lae_A	2e-25	1019	1443	3	492	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase
5lfo_A	2e-25	1019	1443	3	492	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase
5lgb_A	2e-25	1019	1443	3	492	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase,Peroxisomal N(1)-acetyl-spermine/spermidine oxidase
5mbx_A	2e-25	1019	1443	3	492	Peroxisomal N(1)-acetyl-spermine/spermidine oxidase
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005844686.1	0.0	hypothetical protein CHLNCDRAFT_138597
TrEMBL	E1ZNC9	0.0	E1ZNC9_CHLVA; Uncharacterized protein
STRING	XP_005844686.1	0.0	(Chlorella variabilis)

Link Out ? help Back to Top
Entrez Gene	17352028

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]