PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_26_00138

Common Name

CHLNCDRAFT_139785

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

CPP

Protein Properties

Length: 930aa MW: 91236.4 Da PI: 8.0382

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_26_00138	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	47	5e-15	528	566	4	42
TCR 4 kgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkeek 42 k+CnCkkskClk+YC+Cfa+g +C+ C+C++C Nk e+ IGS.gm_26_00138 528 KKCNCKKSKCLKLYCDCFANGGYCGPACSCSSCANKVEN 566 89*********************************9875 PP
2	TCR	52.4	1e-16	598	637	1	40
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++++gCnCkks+C+kkYCeCf+ag+ C+e+CkCe+C+N+ IGS.gm_26_00138 598 QHRRGCNCKKSHCMKKYCECFQAGVPCGEHCKCESCHNTA 637 5899**********************************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.5E-11	525	566	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	31.823	526	638	IPR005172	CRC domain
Pfam	PF03638	1.2E-11	528	563	IPR005172	CRC domain
SMART	SM01114	1.0E-16	598	639	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	5.2E-13	601	636	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 930 aa Download sequence Send to blast
MSSNTPRSNR VRSALPEASP FSSVLARLPD LSPPRTKYTT SFGSLNPMAS PPPANTFGFR 60 QQSAQTPGGG NQGKPIVSFD LLGTTPIKSL QPGDQQLSSP RYDLQSPKFP LFQPSPKQPL 120 GALPTPPSVR LADSSAAGAA ARARFSSPFG SLLDGSSRSG PSPAGGASLA PGRSAAAGQA 180 RFAALFAHAA GTLDEAAAAM GKGDIPPPSA GLHPSYLSPL RPPDGAAPRR PGSGGAVAEA 240 AAAGRDAAAA GDPPQRSGAL AGGAAGLDAI AAAAASAGDR EDEGDAEVAA MLHDGEAEEE 300 EADEAEEEEE EEEEEDDEDF TVGSFRRPAP VRGAGASRAQ QLFQARQRPV RRRQLRFGGS 360 GGGGGEGQEE EPEPAQLVRC TLPQSPICQA VSPAVDGVTF HIARLRDAPT SSASDDGSGS 420 PAHRQRPGAY SLDSPAVQAA THAAVAAALE ASAGAGGARR PARAAAAGAA AAAKAAAEAA 480 GTPMQRRGGA HLARSSSDGG AALPPLTPGE DGVAGPGGAP QALFAGPKKC NCKKSKCLKL 540 YCDCFANGGY CGPACSCSSC ANKVENRAMV AAQREAIKQR NPNAFVQKIE ADAALGGQHR 600 RGCNCKKSHC MKKYCECFQA GVPCGEHCKC ESCHNTAGHS GRRPPGGGAS KRARAGAAAA 660 PQTVSTRQHA TRMSAGGSAL AQQLKAAQAF HAAMAQASAG IATAAGGGAD GGGSQSPGLF 720 PLLQPGPLGA GDGGGGAPLL LPLLLPQGGD APPLPLPAAP DAAPDAAALP ALAAFQAADA 780 ALTAADGAPP SHATPVAALL GPAAAGAATA GGGSGGPGGD TFTFHPISGT DRSGSGSSSG 840 QSTPRAAAAA AAAAAADFAF TLDTPAAAAG AAPPAGASAL EKLLPAAEAG GGAAAAAAAG 900 TAKPASRPGS VRATPTKRKP ARTMTAALM*

Sequence ? help Back to Top

Protein Sequence Length: 930 aa Download sequence Send to blast

MSSNTPRSNR VRSALPEASP FSSVLARLPD LSPPRTKYTT SFGSLNPMAS PPPANTFGFR  60
QQSAQTPGGG NQGKPIVSFD LLGTTPIKSL QPGDQQLSSP RYDLQSPKFP LFQPSPKQPL  120
GALPTPPSVR LADSSAAGAA ARARFSSPFG SLLDGSSRSG PSPAGGASLA PGRSAAAGQA  180
RFAALFAHAA GTLDEAAAAM GKGDIPPPSA GLHPSYLSPL RPPDGAAPRR PGSGGAVAEA  240
AAAGRDAAAA GDPPQRSGAL AGGAAGLDAI AAAAASAGDR EDEGDAEVAA MLHDGEAEEE  300
EADEAEEEEE EEEEEDDEDF TVGSFRRPAP VRGAGASRAQ QLFQARQRPV RRRQLRFGGS  360
GGGGGEGQEE EPEPAQLVRC TLPQSPICQA VSPAVDGVTF HIARLRDAPT SSASDDGSGS  420
PAHRQRPGAY SLDSPAVQAA THAAVAAALE ASAGAGGARR PARAAAAGAA AAAKAAAEAA  480
GTPMQRRGGA HLARSSSDGG AALPPLTPGE DGVAGPGGAP QALFAGPKKC NCKKSKCLKL  540
YCDCFANGGY CGPACSCSSC ANKVENRAMV AAQREAIKQR NPNAFVQKIE ADAALGGQHR  600
RGCNCKKSHC MKKYCECFQA GVPCGEHCKC ESCHNTAGHS GRRPPGGGAS KRARAGAAAA  660
PQTVSTRQHA TRMSAGGSAL AQQLKAAQAF HAAMAQASAG IATAAGGGAD GGGSQSPGLF  720
PLLQPGPLGA GDGGGGAPLL LPLLLPQGGD APPLPLPAAP DAAPDAAALP ALAAFQAADA  780
ALTAADGAPP SHATPVAALL GPAAAGAATA GGGSGGPGGD TFTFHPISGT DRSGSGSSSG  840
QSTPRAAAAA AAAAAADFAF TLDTPAAAAG AAPPAGASAL EKLLPAAEAG GGAAAAAAAG  900
TAKPASRPGS VRATPTKRKP ARTMTAALM*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-21	528	635	12	120	Protein lin-54 homolog
5fd3_B	4e-21	528	635	12	120	Protein lin-54 homolog
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005843975.1	0.0	hypothetical protein CHLNCDRAFT_139785
TrEMBL	E1ZQZ2	0.0	E1ZQZ2_CHLVA; Uncharacterized protein
STRING	XP_005843975.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP323	15	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	1e-22	Tesmin/TSO1-like CXC domain-containing protein

Link Out ? help Back to Top
Entrez Gene	17351229

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]