PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_27_00071
Common NameCHLNCDRAFT_139893
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family bHLH
Protein Properties Length: 458aa    MW: 47702.5 Da    PI: 5.7382
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_27_00071genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH438.4e-14187254255
                      HHHHHHHHHHHHHHHHHHHHHHHCTSCCC.................TTS-STCHHHHHHHHHHHHHHH CS
              HLH   2 rrahnerErrRRdriNsafeeLrellPkas..............kapskKlsKaeiLekAveYIksLq 55 
                      ++ h+++E++RRdriN+ ++eLr+l+P++               +a++ +  K  +L  +++ Ik+Lq
  IGS.gm_27_00071 187 KQPHSIVEKQRRDRINHLIDELRDLVPPQGtaaelgaamaaeaaAAGDSRRPKHVVLSDTIRLIKDLQ 254
                      677*************************656************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.745185253IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.0E-12186261IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-12186265IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.56E-11187258No hitNo description
PfamPF000103.6E-11187254IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-9191259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550217.91E-11366435No hitNo description
PROSITE profilePS5167112.826369448IPR002912ACT domain
PfamPF018424.1E-7369428IPR002912ACT domain
Gene3DG3DSA:3.30.70.2601.6E-8370432No hitNo description
CDDcd048732.34E-12370434No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MEAGLPSSPQ LGTLGSPRTY TYTDAELQSL LTCVLDEGHA GHLEGLALPM GGGHGPAGGH  60
SLQFLPHLPM PTSVTSSEHE PAMFIPSDFA GPQAMGGDAA HLAAPLGLPP LRVGQQAQGH  120
PHMNGGSLEL DPLGSRSSTF TMAGAPGAAP AAQQRQQARQ SQRPGPRAGP AGAARASSLP  180
VPAAAAKQPH SIVEKQRRDR INHLIDELRD LVPPQGTAAE LGAAMAAEAA AAGDSRRPKH  240
VVLSDTIRLI KDLQLQVAEM QVSPPAEGAR AWHEHQMVTE TFNNSHLQPP AAPPNPQPSA  300
PPAPAPPQQE AAAQQETVGM EVQAAAQQAA SGSFLSGDGP HPELPHAPDD DAASDSGVVV  360
ESEAGQIRYV KVTCPDRHGL LADVVRALRE LPLEITTAAI TTRRDHVVYD VFQVEVEDPA  420
LTQEQLRAAV EAALHPAGEK KRKQECQQSP CTALLAG*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843826.10.0expressed protein
TrEMBLE1ZR530.0E1ZR53_CHLVA; Expressed protein
STRINGXP_005843826.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP34551013
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]