PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_28_00058
Common NameCHLNCDRAFT_140027
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family GATA
Protein Properties Length: 192aa    MW: 20362.9 Da    PI: 9.3524
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_28_00058genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA529.7e-17121155135
             GATA   1 CsnCgttkTplWRrgp.dgnktLCnaCGlyyrkkgl 35 
                      Cs+Cg+t++p+WRrgp ++ + LCnaCG +yr++++
  IGS.gm_28_00058 121 CSHCGATESPQWRRGPpNKAI-LCNACGTRYRRTNQ 155
                      ****************66666.**********9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577166.18E-13114155No hitNo description
SMARTSM004012.4E-14115169IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.018115151IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.108.8E-13120154IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.03E-15120171No hitNo description
PROSITE patternPS003440121146IPR000679Zinc finger, GATA-type
PfamPF003202.0E-14121155IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAPFGSTDSM DFFNDLPPLE EAPKSTAAQS LFEGLASLKQ SRVLYRLALV DTETGRPLGY  60
ASDNDLERLA SGSKPAVPSP PSPRAQLASH QQHLAAAEQQ AKEPSFQTLL AETHKTGGPV  120
CSHCGATESP QWRRGPPNKA ILCNACGTRY RRTNQLGSAV PSTQRKRGAQ HCGSEVAKAA  180
GHPPKQPRVV A*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005843659.11e-139hypothetical protein CHLNCDRAFT_140027
TrEMBLE1ZRF11e-137E1ZRF1_CHLVA; Uncharacterized protein
STRINGXP_005843659.11e-138(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP4501526
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47140.13e-12GATA transcription factor 27
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]