PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_2_00039
Common NameCHLNCDRAFT_137572
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family B3
Protein Properties Length: 198aa    MW: 20803.6 Da    PI: 10.877
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_2_00039genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B334.14.8e-11484687
                    ..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
              B3  6 tpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                    +p++ l+ + lvlp +f +e  ++   s   tl++++g++W  +++   +++ +r  +t+GW+ F++an  ++gD ++ k  g+
  IGS.gm_2_00039  4 IPASCLQGSGLVLPAEFRDEVVKD---SGAYTLQNSQGKQWPCTITRktQGGHERADITGGWRPFASANAFQAGDEILVKSLGN 84
                    5777888899*******9888655...3479**************65444445559*******************998885554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.406195IPR003340B3 DNA binding domain
PfamPF023621.8E-8484IPR003340B3 DNA binding domain
SuperFamilySSF1019368.63E-10691IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.1E-9693IPR015300DNA-binding pseudobarrel domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
MEIIPASCLQ GSGLVLPAEF RDEVVKDSGA YTLQNSQGKQ WPCTITRKTQ GGHERADITG  60
GWRPFASANA FQAGDEILVK SLGNRPSRLQ ITKTGRTGTP KGTPRAAKTP AKTPAKTPRS  120
RSAGKPKSAS KTPASGGVAK RRGSSSTGRR RQAAAVVAAA EPEGPEEAEV PAGRLPPYVP  180
PAGEYMQPIW PTWCSIM*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851070.11e-140expressed protein
TrEMBLE1Z4021e-139E1Z402_CHLVA; Expressed protein
STRINGXP_005851070.11e-139(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]