PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_2_00122
Common NameCHLNCDRAFT_137655
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 693aa    MW: 71909.6 Da    PI: 8.0925
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_2_00122genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP224.56.8e-08472523254
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtae....eAakaaiaarkkle 54 
                     +++GV++++ ++rW+A+++       + ++ +lg f +      +Aa a++ a+++ +
  IGS.gm_2_00122 472 QFRGVSRHRLTQRWEASLWL------NgRQLYLGGFNSQArrpeDAAHAYDLAALACK 523
                     59***************999......44*********9435666*********99765 PP
2AP225.24.2e-08567610149
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaa 49 
                     s+++GV+  + +grW+A+I  +   g rk++s g f ++e+Aa+++++a
  IGS.gm_2_00122 567 SRFRGVS-GH-NGRWEARIGSF---GGRKNVSFGVFESEEGAARQYDRA 610
                     789***8.44.7******9997...336*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.2E-14472538IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-10472531IPR001471AP2/ERF domain
PROSITE profilePS5103211.864472532IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-10472532IPR016177DNA-binding domain
CDDcd000188.06E-11473531No hitNo description
PROSITE profilePS5103212.233562624IPR001471AP2/ERF domain
CDDcd000181.15E-12567625No hitNo description
SuperFamilySSF541718.5E-10567625IPR016177DNA-binding domain
SMARTSM003805.2E-13568630IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-10568624IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 693 aa     Download sequence    Send to blast
MSAYDDHSNI PRSFSSIDDG LNLLLAELKS EDGAPGFREG PISLHGFTPF LKTESLGPES  60
LAVRLAATPA TTTTAGQTGP LLATASSYTV LKGGASAATP LVLPNAFIPV PAALAPGRAL  120
AACGGKLRPG GGPPPLHLLH HSSGSGSFTI PAYGRPFTQL DFITTDDLED GAPAGGMLCR  180
YCPSGGGLTD FAELADESRL GELPTDEELR LLLFDPSAPH AAPAGGGGSG CGAGAGAARA  240
ALLMQLPQPA ALRQHASSYS SSAPAAAAAF EAPAAALAAA AAARPASVLR IRTGAGAPGG  300
AGARAAADTG SPKRRADRME LDPLARDSPR GGKRHSGGAA GAVAATSGSA WSEGTEDRGG  360
ESPGSGELDS SCPHHAWFTG TQQWGGAVAA AGGSSLPPSR FGLEHSRRQG GRTAAAAAAA  420
ADRAYTPARQ RGRAAARQQQ QYQASWEEEE EEEEEAAALA VAAQQQQQQQ QQFRGVSRHR  480
LTQRWEASLW LNGRQLYLGG FNSQARRPED AAHAYDLAAL ACKGLDAQIN FGPEDYADQL  540
REIAGYTRDE VVAYVRRRSS AFSRGKSRFR GVSGHNGRWE ARIGSFGGRK NVSFGVFESE  600
EGAARQYDRA LILEKGRTAK TNFPIRDYDA EVAECGTVRG PAAAAEAART TLPRNREATA  660
DEKKRAAVIY ADALVRALRQ PHQQGGRGGG RA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1123131GGKLRPGGG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005851105.10.0hypothetical protein CHLNCDRAFT_137655
TrEMBLE1Z4700.0E1Z470_CHLVA; Uncharacterized protein
STRINGXP_005851105.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-34AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]