PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_42_00024

Common Name

CHLNCDRAFT_142555

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

AP2

Protein Properties

Length: 938aa MW: 96687.1 Da PI: 11.4138

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_42_00024	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	34.1	7e-11	368	415	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++kGV++ + +grW+A+ + + +k +++g f+ +eeAa+a + a+ +++g IGS.gm_42_00024 368 KFKGVYRMP-TGRWRAQFTH---R--NKVIQIGMFDGEEEAARAWDMAAVQYRG 415 79*****.9**444...3..5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00380	6.5E-5	368	429	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	14.552	368	423	IPR001471	AP2/ERF domain
Pfam	PF00847	1.8E-7	368	415	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.63E-12	368	425	IPR016177	DNA-binding domain
CDD	cd00018	1.46E-10	368	425	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.0E-10	368	424	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 938 aa Download sequence Send to blast
MATPAAAAAA PRAGAGGMRD SAAPLEPILR ALQMLGARSQ QQVEGQEQPR APRAPVPAHL 60 RLPTLPAQLL PANRAAFGAP NGSTTRPAGA ATITTGRVGG APAGGGGGAL LSPRGPAAAA 120 PVLFTASPVL ILPTQQVCLL QAQEQVQSQH RGHQSHPNPR SAAAQAPRTR NSGGASALRR 180 QQQQQRQRQQ QQLQLQAQQP PPPQPPQRQQ PDAPTVAAAG SAAGAAMAAG GADVGPLFVA 240 AQGRAPFQYV FGSSMQVRQP PPAPPAVEPR AIKPSPATTP PSSPAYAHRQ KQPEGPGEQQ 300 AAPPRQPQPP QQDGEGQAAG EDSKGDEGAA AAAAGQQDEQ ARGEFAPFAV RSPPTDDGAK 360 PFSMRSMKFK GVYRMPTGRW RAQFTHRNKV IQIGMFDGEE EAARAWDMAA VQYRGAATKI 420 NIPVSQATIQ EWLKDKPVGW SFFYDDNDQP LPQPLAGQAL LQKQKELQLK QAKEQQAKEQ 480 QAGKADTTDA NKKGKKEPSA GTAAAQGSEA GKAPASQAPP AARPGAAAPL RAAASPCAAA 540 APAPAAASQP SSPRAAAGAA RPAAAASTAK PSIVEPASLP AGSIPLLIST PVAEGIVQLP 600 GPVHIVQASP PALRLARAPA AVPAPQRLQP QPPFQSLPLP AAHRYMPGNQ RGHQSVTTGS 660 LLPGAHTVPM PVMVQKRQMS PTAVPGAASV PYAVQMPRQQ PLRGSQPHLP QQQQQQQQPQ 720 QNGPARPRAA AAKRQRAAAQ AAASLLEDVL SPVVPSATTK EDRALRAARR SAAAEERSAA 780 SEAASTQHPR RSLAGSLIAA AEAVEEAEAA AEVAAAAMAL QKLPRLTINT SRVQPVTEPG 840 AAALGSALQH LNGGISPMAV TTLHPGSPTA TTPHSPGSAR PPHRQRKKPA HASPDLLPSP 900 WDLPVERLHS LSPPPHGDLG RGGGTKRQRT GSPPGVH*

Sequence ? help Back to Top

Protein Sequence Length: 938 aa Download sequence Send to blast

MATPAAAAAA PRAGAGGMRD SAAPLEPILR ALQMLGARSQ QQVEGQEQPR APRAPVPAHL  60
RLPTLPAQLL PANRAAFGAP NGSTTRPAGA ATITTGRVGG APAGGGGGAL LSPRGPAAAA  120
PVLFTASPVL ILPTQQVCLL QAQEQVQSQH RGHQSHPNPR SAAAQAPRTR NSGGASALRR  180
QQQQQRQRQQ QQLQLQAQQP PPPQPPQRQQ PDAPTVAAAG SAAGAAMAAG GADVGPLFVA  240
AQGRAPFQYV FGSSMQVRQP PPAPPAVEPR AIKPSPATTP PSSPAYAHRQ KQPEGPGEQQ  300
AAPPRQPQPP QQDGEGQAAG EDSKGDEGAA AAAAGQQDEQ ARGEFAPFAV RSPPTDDGAK  360
PFSMRSMKFK GVYRMPTGRW RAQFTHRNKV IQIGMFDGEE EAARAWDMAA VQYRGAATKI  420
NIPVSQATIQ EWLKDKPVGW SFFYDDNDQP LPQPLAGQAL LQKQKELQLK QAKEQQAKEQ  480
QAGKADTTDA NKKGKKEPSA GTAAAQGSEA GKAPASQAPP AARPGAAAPL RAAASPCAAA  540
APAPAAASQP SSPRAAAGAA RPAAAASTAK PSIVEPASLP AGSIPLLIST PVAEGIVQLP  600
GPVHIVQASP PALRLARAPA AVPAPQRLQP QPPFQSLPLP AAHRYMPGNQ RGHQSVTTGS  660
LLPGAHTVPM PVMVQKRQMS PTAVPGAASV PYAVQMPRQQ PLRGSQPHLP QQQQQQQQPQ  720
QNGPARPRAA AAKRQRAAAQ AAASLLEDVL SPVVPSATTK EDRALRAARR SAAAEERSAA  780
SEAASTQHPR RSLAGSLIAA AEAVEEAEAA AEVAAAAMAL QKLPRLTINT SRVQPVTEPG  840
AAALGSALQH LNGGISPMAV TTLHPGSPTA TTPHSPGSAR PPHRQRKKPA HASPDLLPSP  900
WDLPVERLHS LSPPPHGDLG RGGGTKRQRT GSPPGVH*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005842844.1	0.0	hypothetical protein CHLNCDRAFT_142555
TrEMBL	E1ZTW1	0.0	E1ZTW1_CHLVA; Uncharacterized protein
STRING	XP_005842844.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP9751	4	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72360.2	1e-09	ERF family protein

Link Out ? help Back to Top
Entrez Gene	17350173

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]