PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_4_00327
Common NameCHLNCDRAFT_142186
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family G2-like
Protein Properties Length: 422aa    MW: 43669.9 Da    PI: 4.9039
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_4_00327genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like31.44.3e-107471654
         G2-like 16 eaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQkYR 54
                     a+eqLGG e+A Pkt+l++++   + Ltl+hvk HLQ  R
  IGS.gm_4_00327  7 AALEQLGGLEVAKPKTMLDVLQpeFPELTLQHVKWHLQSSR 47
                    69*******************733679***********876 PP
2G2-like26.91.1e-0862111451
         G2-like   4 lrWtpeLHerFveaveqLGGsekAtPktilelmk..vkgLtlehvkSHLQ 51 
                     +rWt  L +++  av+qLGG+ +A P+ i e m+   +++t   +k HL 
  IGS.gm_4_00327  62 IRWTGRLEAAYEGAVAQLGGIYQARPRDIQEKMQgkFPDITAMSIKYHLF 111
                     79*******************************733679*********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.3E-7448IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-562112IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MEEAYEAALE QLGGLEVAKP KTMLDVLQPE FPELTLQHVK WHLQSSRRRE SREREQGPSD  60
AIRWTGRLEA AYEGAVAQLG GIYQARPRDI QEKMQGKFPD ITAMSIKYHL FAQRRREQRL  120
QQRGAGNAGG AAADSSQAAA PSAADAPPPA AAASAAATAA AAAAPAQRQP TSSGGFAAHP  180
MDCGQGQQQR QRYCFFAHPE HVPWIPFTVP SADEALAVLR KNTQHCRQVI QELEQQADQL  240
AEIVVALEAS SITAEAVLGS PGEDDMASSR AGATLGVAPG GGTLTAAELG SGLAAAQRLL  300
DTPAQMAQQL LQLLPDLYPL GPGGSATISE AAAVQAVGQR SDRAVAALCA LLLQQDAAAG  360
LPGGPASGAA AAGPSGGDSG SHDAAACTQP QQLGRGAPGL LQTEVQLTQE QLDLLASLLC  420
Q*
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2373820.0AC237382.1 Chlorella variabilis clone JGIBWCW-33E15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850355.10.0hypothetical protein CHLNCDRAFT_142186
TrEMBLE1Z7Z40.0E1Z7Z4_CHLVA; Uncharacterized protein
STRINGXP_005850355.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]