PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_4_00452
Common NameCHLNCDRAFT_142311
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family C3H
Protein Properties Length: 248aa    MW: 26065.1 Da    PI: 5.2819
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_4_00452genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-0746611227
                    TS--TTTTT-SS-SSS CS
         zf-CCCH 12 tGtCkyGdrCkFaHgp 27
                     G C++G+rC+FaHg+
  IGS.gm_4_00452 46 DGNCRFGARCSFAHGE 61
                    599***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501039.6953862IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.03E-54366IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-74565IPR000571Zinc finger, CCCH-type
PfamPF006424.8E-54661IPR000571Zinc finger, CCCH-type
SuperFamilySSF578501.85E-20161231No hitNo description
PROSITE profilePS5169817.348169228IPR003613U box domain
Gene3DG3DSA:3.30.40.104.8E-22169236IPR013083Zinc finger, RING/FYVE/PHD-type
PfamPF045641.1E-15170232IPR003613U box domain
SMARTSM005041.3E-17173235IPR003613U box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016567Biological Processprotein ubiquitination
GO:0004842Molecular Functionubiquitin-protein transferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 248 aa     Download sequence    Send to blast
MQANSTSYSL LETLGEGQSV DEENHAPDVG DQLTLDDKKF TRMCEDGNCR FGARCSFAHG  60
ERELREHVHD EAAVLAELAS KGQRPMYGPG PNSPIPPAAA PPRQYSVGAG SNRGGGVGSP  120
PARRLPAPPP PPPSASVAVG AADVGAVPMS SARLAQYLAA AQLGDDDAHV PEAFICPITH  180
VVLQDPVVAA DGFTYERDAI QSWLTKNRTS PMTGEQLADA HLVPNHTLMA AMRQVLGDGA  240
CSLRRQQ*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005850410.10.0hypothetical protein CHLNCDRAFT_142311
TrEMBLE1Z8980.0E1Z898_CHLVA; Uncharacterized protein
STRINGXP_005850410.10.0(Chlorella variabilis)
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]