PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00360
Common NameCHLNCDRAFT_143031
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 251aa    MW: 26312.5 Da    PI: 10.9373
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP222.23.4e-075090146
             AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaa 46
                    sg+ GV+ +k+++r++ +++       +k+++lg f+    Aa+a+
  IGS.gm_5_00360 50 SGFLGVTKHKRTQRYEGHVWAD-----KKQVYLGAFDDQRLAAAAH 90
                    7999************997773.....5**********88888887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541712.62E-750103IPR016177DNA-binding domain
SMARTSM003802.2E-451120IPR001471AP2/ERF domain
PROSITE profilePS5103210.67951114IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-452101IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MDGLTPQPQQ KQKPQLQQLL ASVQLCMARA AAADLGGSGV DCNKKKAGRS GFLGVTKHKR  60
TQRYEGHVWA DKKQVYLGAF DDQRLAAAAH NIIVLRSRGA APHPAGEDDG LNFPPAWYSE  120
LLPMVAVMPQ AEVVSALRTY SKSLTARPSG RDGGGSRGGS RACSRASSEG QGGDAISSGG  180
RGGSAASSLA SGRRNKRKAP TPTASVTDLE SMGQRQQWQQ QQAAQDQLPP AGSTRPRRAA  240
QQVACSLAAR *
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849854.10.0hypothetical protein CHLNCDRAFT_143031
TrEMBLE1Z9C11e-179E1Z9C1_CHLVA; Uncharacterized protein
STRINGXP_005849854.11e-180(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.12e-11AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]