PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00439
Common NameCHLNCDRAFT_143110
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family MYB
Protein Properties Length: 987aa    MW: 107573 Da    PI: 6.2229
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00439genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.32.7e-16644689148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W +eEde l++a +++G + W+++ar ++ gRt+ qc++r+ ++l
   IGS.gm_5_00439 644 KGKWAQEEDEALLKAMALHGRK-WSLVARLVP-GRTDVQCRERYINVL 689
                      79******************99.*********.***********9975 PP
2Myb_DNA-binding23.71.1e-07698742344
                      SS-HHHHHHHHHHHHHTTTT....-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg....tWktIartmgkgRtlkqcksrw 44 
                      +W  e d +l+ + +q+  +     W+++a+ ++ gRt+kqc  r+
   IGS.gm_5_00439 698 PWNGESDRRLLALATQHTQPdgkiKWSAVAAGLP-GRTDKQCSIRY 742
                      6888899***************************.*******8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0035418526IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.9E-10421437IPR009057Homeodomain-like
PROSITE profilePS500905.413494524IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.9E-10496530IPR009057Homeodomain-like
PfamPF139213.3E-5498541No hitNo description
SuperFamilySSF466895.59E-10510581IPR009057Homeodomain-like
PROSITE profilePS500907.131525582IPR017877Myb-like domain
SMARTSM007170.003529584IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-7531577IPR009057Homeodomain-like
CDDcd001672.12E-4532577No hitNo description
SMARTSM007176588638IPR001005SANT/Myb domain
PROSITE profilePS500904.96596636IPR017877Myb-like domain
PROSITE profilePS5129426.407639693IPR017930Myb domain
SMARTSM007171.7E-16643691IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.1E-18643689IPR009057Homeodomain-like
SuperFamilySSF466897.91E-19643742IPR009057Homeodomain-like
PfamPF002491.7E-14644689IPR001005SANT/Myb domain
CDDcd001678.21E-12646689No hitNo description
Gene3DG3DSA:1.10.10.601.5E-9690746IPR009057Homeodomain-like
SMARTSM007170.0075695748IPR001005SANT/Myb domain
CDDcd001671.67E-6698745No hitNo description
PROSITE profilePS500907.77698746IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 987 aa     Download sequence    Send to blast
MADGSSSDDD ELELADLEGL RLELEALRQE LGDGFVAYQD PGEELDESDA EEDEAPPLPG  60
AASSAAAPPP STLQPACQAD RETVAEESEE DEDEGEAGGA QDDAEEEELW QRREATAEEQ  120
QQRREAEEER RHERQDEADE RQQAVQHVAA ALQHPQAAGT GPRRVYNRQV LVPAPTPVAP  180
QQEQKKKKPH QQQQKQPQPQ QQQKKQPQQQ KQQKHLQQQQ QKKHMQQQQQ KKQQQQKKAK  240
LHVVLGSKAS KAAAGAGKKQ QGKATHATRQ RKSKPAAEDE EGAPEPRPAA EAEERTEEAP  300
PASKLQTIRD ALEANLQLQG RLRRLLASTD RAIDRNAAVL LQVRSLKAKK SAPPAVATVA  360
ASAEPAQLQA PIGTSWFWGG SAGAGGQGVP PNPDAQALLP LYSHLPFRQA LAACRSFRGA  420
RWSEEEQQRL RDGVVQLVQE FQLQDVMQEM QQRLESGGAV GMADYEASRQ RIAALTLHSP  480
GTPQGEVVDQ LAAGFREEDW ATLVQRSRLH RTTTECRLQW TNSLAPSLSQ REWTAQEDQQ  540
LRLLAEQHNA REWEAVSREL AAATGGGTRP PLACLQRHQL LAAAAAKEGV KFEAGEDMAR  600
LTQLVAKHGS AWKRIAEEFA GGFDPDQLMH IWRRHAQRGP VARKGKWAQE EDEALLKAMA  660
LHGRKWSLVA RLVPGRTDVQ CRERYINVLD PGVATYRPWN GESDRRLLAL ATQHTQPDGK  720
IKWSAVAAGL PGRTDKQCSI RYKALTSGES GGKERKPRKR AKEGGGGGGR GGKQRRTAAA  780
ADGGEGPSAE GGGEEGGTGE GGEASPPGEG GALRLRRTRR RPARLASPEA DEEEREGQRA  840
QQPEEAVVAV EEPKQQQQQL QEQQQEQQEQ QQEQQPMDVD GLGAVQDVQQ QQQVRQPHRQ  900
HQQTQDEKQR QPAKKQRGRA GAGAGEGQGA AAQPSAAAQP PLAADVTAAL GCQKTEEPAL  960
LPAPPPATAS VLPFAPAAAV GQVAAW*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A5e-156427479108MYB21
3osf_D5e-156427479108MYB21
3osg_A5e-156427479108MYB21
3osg_D5e-156427479108MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849877.10.0hypothetical protein CHLNCDRAFT_143110
TrEMBLE1Z9H00.0E1Z9H0_CHLVA; Uncharacterized protein
STRINGXP_005849877.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP42351111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.24e-24myb domain protein 4r1
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]