PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_5_00463

Common Name

CHLNCDRAFT_143134

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

G2-like

Protein Properties

Length: 514aa MW: 52145.6 Da PI: 7.1218

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_5_00463	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	82.4	5e-26	114	168	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrW+p+LH+rF +av++LGGs +A Pk i+ m+v+gLtl+hvkSHLQk+R IGS.gm_5_00463 114 KERLRWSPQLHQRFCKAVAELGGSAVAKPKDIVTKMGVPGLTLAHVKSHLQKHRQ 168 68***************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.569	111	171	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.3E-24	112	168	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.15E-12	113	168	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.5E-19	114	169	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-7	116	167	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 514 aa Download sequence Send to blast
MHMVAAGCGK AVAAKLTAAD TPAGSGEGGK ASSASTDDVE LGVVERSEQP TIKLEVAAAE 60 QQHLPAAADA LSDYFNAAAA ALPSSLPPAA PTTSSPLATD SEDGEALRVT IDSKERLRWS 120 PQLHQRFCKA VAELGGSAVA KPKDIVTKMG VPGLTLAHVK SHLQKHRQQE GVTYVPHSTR 180 NSPAATRRFH SQQHAAAAQP RGWPAAGRSG SSSDSEEPPA AKRARTASRG ASPASGDASA 240 GGQWAQQPRQ PLGAVVGGDG GAAGMPMASS AAATASSADP FLHYLQALAS VPAAQPQEAP 300 PPLPVPLESA AEQDDGGLHR LHALAELAST QYDELMAERR ALEGQAATLG ALAERLAAPP 360 HQAQWAAQAP GLHATVGPLL LRQAQVQEAV REHMRRGALL MEEVRAFQRA AQEQLAQQVQ 420 QGPGAMSMVA AAMAALRGAA EQRGGPAVGQ PGVPPSLATQ LLAVMAAAGV GAAPGVVPPA 480 PQPAPNAAGA AAGLAQLQHL YQSAAMLAAR QQA*

Sequence ? help Back to Top

Protein Sequence Length: 514 aa Download sequence Send to blast

MHMVAAGCGK AVAAKLTAAD TPAGSGEGGK ASSASTDDVE LGVVERSEQP TIKLEVAAAE  60
QQHLPAAADA LSDYFNAAAA ALPSSLPPAA PTTSSPLATD SEDGEALRVT IDSKERLRWS  120
PQLHQRFCKA VAELGGSAVA KPKDIVTKMG VPGLTLAHVK SHLQKHRQQE GVTYVPHSTR  180
NSPAATRRFH SQQHAAAAQP RGWPAAGRSG SSSDSEEPPA AKRARTASRG ASPASGDASA  240
GGQWAQQPRQ PLGAVVGGDG GAAGMPMASS AAATASSADP FLHYLQALAS VPAAQPQEAP  300
PPLPVPLESA AEQDDGGLHR LHALAELAST QYDELMAERR ALEGQAATLG ALAERLAAPP  360
HQAQWAAQAP GLHATVGPLL LRQAQVQEAV REHMRRGALL MEEVRAFQRA AQEQLAQQVQ  420
QGPGAMSMVA AAMAALRGAA EQRGGPAVGQ PGVPPSLATQ LLAVMAAAGV GAAPGVVPPA  480
PQPAPNAAGA AAGLAQLQHL YQSAAMLAAR QQA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005849631.1	0.0	hypothetical protein CHLNCDRAFT_143134
TrEMBL	E1Z9J4	0.0	E1Z9J4_CHLVA; Uncharacterized protein
STRING	XP_005849631.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP111	16	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.1	2e-18	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	17356867

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]