PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_5_00572
Common NameCHLNCDRAFT_143243
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family AP2
Protein Properties Length: 1038aa    MW: 105237 Da    PI: 5.7185
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_5_00572genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP230.96.7e-10199243150
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaar 50 
                     +g++GV+++k++ r++A ++       +k+ +lg f+ +e+Aa a++  +
  IGS.gm_5_00572 199 TGFRGVTQHKRTRRYEANVWMD-----HKQMYLGAFDVPEQAAHAHDIGA 243
                     69****************8882.....4******************9766 PP
2AP233.41.1e-10520561148
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaia 48 
                     sg+kGV+ +k+ +r+ A+I+        k+ ++g+f tae+Aa a++ 
  IGS.gm_5_00572 520 SGFKGVTLYKRCQRYNAHIWL------GKQTHIGTFHTAEQAAVAHDV 561
                     79*******************......6*****************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.8E-5199240IPR001471AP2/ERF domain
PROSITE profilePS5103213.261200257IPR001471AP2/ERF domain
SMARTSM003801.0E-9200263IPR001471AP2/ERF domain
SuperFamilySSF541713.92E-9200258IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.3E-9201258IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-8520576IPR016177DNA-binding domain
SMARTSM003800.0011521582IPR001471AP2/ERF domain
PROSITE profilePS510329.928521576IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.2E-6522576IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1038 aa     Download sequence    Send to blast
MQPEFTIEVP SADAEAPIKA GQGPAASDFT LSLLSDLERQ LGEDAAAMDA EREPTAPTSH  60
HTADVPAPDT QLTDATPEAP AGLAAAAADG SSAAPLGALP PTLAAGVAGA GAGGATPTVP  120
AAVAAAGGSP GGEEEDELAA NLLSNMASWQ TELDTFQSAL RACMESRPVP GAVQGSPSTV  180
DESGRGAARL MHSGPKGITG FRGVTQHKRT RRYEANVWMD HKQMYLGAFD VPEQAAHAHD  240
IGALCSGKAR AEALNFPLTD YDALMPMLYS LPHAQVVSSL RGYGRLPTAR PPGGISSGRL  300
YSSPSARGAS TSARRARSVD TDDSDEGVEA PPRPRPRRAR KVSASPASRS AAALPPLPPA  360
DWQAGLQLPA QQQQQQGVKA EVEAPPPGVA PVAAATGGEG AKSDAASLAA AQQAQLQALS  420
AALMGGAQAT SPLAAAAVPE PAPAAGGMAT AAAAPPPPLA GARNPLPPAA APFSAGASAL  480
GAFESALWRT MAISHTLPRP EGVQEGASHR PLHSGPKGQS GFKGVTLYKR CQRYNAHIWL  540
GKQTHIGTFH TAEQAAVAHD VMELWRNAAA QGLNFANTGY ADLLPLLGPL SEADALCALR  600
NYSRSPSAAA AAAASGAASH VPGRSRVAGG PRQPAPSAGA STKSAAPELA APPPPPPSLR  660
RRHRKPQHGG GGGSGNKSDS SSGGSVPAQR QTAGSLMWYM LEQEKSADDE FGGEEEDPDF  720
SPEDGEEEWQ EEHARERHSS PSGEPLGFQP RGTRSVAAAL AGQLPPEQAV VGVSMRGQAA  780
WFGRLDRQRT AVAADVVLLW RRLALAAAGE EDDKDAATAF NCPAACYEQD AALSPGQLCQ  840
FMAAVIPQDP PAAGAPGTAG AGAAAAALIA IPSRLPSKGA AAPVAAAPTP ALAPGVLLGA  900
RKRKQQALLE EARAAKLQHM GPAPAAAAAA AAPAAAPQPT AGGGGAAEQP QGALAEAAAA  960
VQQADPSNSD GMLAALQQLV AAGKGGRLLQ EVVEGWGGYP LMQQQDLFGC LRFPVCNGDW  1020
DQLEGRLQVA LDLASLF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1332341RPRPRRARKV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005849929.10.0hypothetical protein CHLNCDRAFT_143243
TrEMBLE1Z9T30.0E1Z9T3_CHLVA; Uncharacterized protein
STRINGXP_005849929.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP561657
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51190.14e-11AP2 family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]