PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID IGS.gm_8_00085
Common NameCHLNCDRAFT_144757
Organism
Chlorella variabilis NC64A
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella
Family bHLH
Protein Properties Length: 473aa    MW: 49932.7 Da    PI: 8.5436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
IGS.gm_8_00085genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.8e-11139185455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h ++E rRR+riN+++e Lr l+P+      ++ + a  Le++v+Y++ Lq
  IGS.gm_8_00085 139 MHVQAEARRRSRINERLEALRLLVPHT-----ERANTANFLEEVVQYVQRLQ 185
                     7999**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.608135184IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-11138197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.0E-8139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.9E-12139195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.70E-7140188No hitNo description
SMARTSM003531.3E-6141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MTKEPRLCTG AASTSPLALD PNALTALQDL LARVPAAAVN MQAASAMPFV SHQQDLEVQQ  60
LLQHLQSSAR RERDAGAPQL PVPPALPNGG DGGAPPAPSR PAAATSRPGR SAGEARPATS  120
YNARHQQAPS SRSVLFHAMH VQAEARRRSR INERLEALRL LVPHTERANT ANFLEEVVQY  180
VQRLQSRVTD LERQLGLPAS VAAGQKAIAF ADDTPEATTL TAQQDDRRAS QSMPEQGPAP  240
PAQPTQALPA STPPAPAPEA QAGVHSVQAV LALLQQASQA PPVPAQEQVQ MLLLQAMQAQ  300
AVQAQVQQQL DLLQQQQQQQ VLPRHQPAAQ FSLQFQPPPS LPQQQQQQQQ QQQPQAQAFL  360
QGMGSRPLAH SGATSGGGSG SRGDSGARRP YPAALGPQML AAAESLGTLS AGGGSRRSAS  420
RSVVQEEADA AAAEAAKRRG GPGIATDEEL DQLHVHLAGQ QDDAKRRRLE SQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1464468KRRRL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00219DAPTransfer from AT1G69010Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_005848230.10.0hypothetical protein CHLNCDRAFT_144757
TrEMBLE1ZCY30.0E1ZCY3_CHLVA; Uncharacterized protein
STRINGXP_005848230.10.0(Chlorella variabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
ChlorophytaeOGCP566588
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00050.14e-10bHLH family protein
Publications ? help Back to Top
  1. Blanc G, et al.
    The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex.
    Plant Cell, 2010. 22(9): p. 2943-55
    [PMID:20852019]