PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_8_00209

Common Name

CHLNCDRAFT_144881

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

MYB_related

Protein Properties

Length: 434aa MW: 46768.2 Da PI: 9.773

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_8_00209	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	364	408	2	46
SSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqk 46 g WT+eE+ l+vd + +G g W + a++++ R ++qc ++++ IGS.gm_8_00209 364 GEWTEEEHRLFVDTARAHGVGdKWGLFASYLP-QRVGYQCSAYYRD 408 78****************************.*******9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	8.97E-9	354	408	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.4E-7	362	411	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.165	363	410	IPR017877	Myb-like domain
Pfam	PF00249	2.9E-6	364	408	IPR001005	SANT/Myb domain
CDD	cd00167	1.08E-4	365	407	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MTGDRPQQAA AFGDPPSVRQ QPLITIHEND NPNPDSLAAG HRRKRRGGGG DDPLPPSAAR 60 PRQQSRAGSA AAALAAGAAE HGDDRPAKRQ RTAKAVAQAA LALAEQMEAA EDEETGEEAA 120 APPAPPAAAR PRQRRQRVLV DVHGGVGMSA AGRQQLEPEE RLERIRRNEQ MLRQLGVQEA 180 AGGLAAAAAA EQHAAQPTAR SRGPPRPRER RPALPAAVLP ARKSARQRGD RPLTQEEAVA 240 AAATELGAAA VPDLSQATDK ELEHGALLDL EQYFKLIGQD ISEAVHTDGR FHGWVNPVVC 300 ERYGIAGGAD TAWEAGGGGQ FSFKIDKKAI PSSLKGRGWR DARAFSHTQL QKNPNSYFYR 360 HAQGEWTEEE HRLFVDTARA HGVGDKWGLF ASYLPQRVGY QCSAYYRDVI IPQGLVIDKR 420 FRMSRNGKAV YVG*

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MTGDRPQQAA AFGDPPSVRQ QPLITIHEND NPNPDSLAAG HRRKRRGGGG DDPLPPSAAR  60
PRQQSRAGSA AAALAAGAAE HGDDRPAKRQ RTAKAVAQAA LALAEQMEAA EDEETGEEAA  120
APPAPPAAAR PRQRRQRVLV DVHGGVGMSA AGRQQLEPEE RLERIRRNEQ MLRQLGVQEA  180
AGGLAAAAAA EQHAAQPTAR SRGPPRPRER RPALPAAVLP ARKSARQRGD RPLTQEEAVA  240
AAATELGAAA VPDLSQATDK ELEHGALLDL EQYFKLIGQD ISEAVHTDGR FHGWVNPVVC  300
ERYGIAGGAD TAWEAGGGGQ FSFKIDKKAI PSSLKGRGWR DARAFSHTQL QKNPNSYFYR  360
HAQGEWTEEE HRLFVDTARA HGVGDKWGLF ASYLPQRVGY QCSAYYRDVI IPQGLVIDKR  420
FRMSRNGKAV YVG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848272.1	0.0	hypothetical protein CHLNCDRAFT_144881
TrEMBL	E1ZD79	0.0	E1ZD79_CHLVA; Uncharacterized protein
STRING	XP_005848272.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4636	7	7

Link Out ? help Back to Top
Entrez Gene	17355813

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]