PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

IGS.gm_8_00455

Common Name

CHLNCDRAFT_145127

Organism

Chlorella variabilis NC64A

Taxonomic ID

554065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Chlorophyta; Trebouxiophyceae; Chlorellales; Chlorellaceae; Chlorella

Family

C2H2

Protein Properties

Length: 966aa MW: 103452 Da PI: 7.729

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
IGS.gm_8_00455	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.5	0.00044	432	454	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C dC F + ++L+rH+ H IGS.gm_8_00455 432 ECADCFVAFATADELRRHQLErH 454 5******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.40.10	1.4E-4	164	224	IPR013083	Zinc finger, RING/FYVE/PHD-type
PROSITE profile	PS50089	9.598	176	217	IPR001841	Zinc finger, RING-type
SMART	SM00355	40	281	308	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	4.7	345	368	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	347	368	IPR007087	Zinc finger, C2H2
SMART	SM00355	18	369	396	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.034	426	459	IPR007087	Zinc finger, C2H2
SMART	SM00355	6.4	431	454	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	433	454	IPR007087	Zinc finger, C2H2
SuperFamily	SSF82708	2.35E-17	673	765	IPR001374	R3H domain
SMART	SM00393	1.1E-12	673	749	IPR001374	R3H domain
PROSITE profile	PS51061	14.849	687	750	IPR001374	R3H domain
Pfam	PF01424	2.2E-14	689	748	IPR001374	R3H domain
CDD	cd02325	9.09E-13	690	748	No hit	No description
Gene3D	G3DSA:3.30.1370.50	5.8E-14	691	754	IPR001374	R3H domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 966 aa Download sequence Send to blast
MHQAQFAGRG PAAGQRQAAS APPELEQAQQ ARPVPQPRRR ERPPRPQQQQ QQQQRGAGSL 60 LRPLEAAASG AANDRQRRQQ AAPVAGGEPS SSSDAEGAGT QLGGQAQPQQ QAAAAGGLEA 120 AANTAAQPRQ EPRSRQRQER QAGERGADAA GDAAALDSSG AAGPQPPEPL PDAPHCLVCC 180 HEMAEVGIGA CNHKQVCGTC TLRLRLCYDR QDCPLCKAEL KEVIIAPWRP QLPDWQAFEQ 240 HPEWLARSAK WAHGSIWADR WRRGGRLSSR LLHDLQRRTA LACAVCDPGG EAPLARREHL 300 LVHVQEAHGL RLCSLCLQEG RLFPLELQAF PSLQALQAHS EAAHPHCGFC RRTFYDDDAL 360 WKHMHQAHFS CHVCPPPVAA HAYFNRAPDL LRHMRHAGRA APAPVAVAAP APAPAPALPC 420 GASEHFMCDE PECADCFVAF ATADELRRHQ LERHSARMPR WDSSRARPLQ LDISFARRQG 480 PLSAAEATAE RRRQRQRSRG PQDVRMMEGA RPGEGPPPDQ WPAGFEYARE ADGGLRVIDD 540 ADVPAAAYPG GGGGGGSGSG GGLMGAGSWA EHRPQRQQRG GGDFPSLSAA AAGEGGGGGG 600 AGSSRPPPLV KKTVKCPCGR RVSHYAVAEG QEVPPLECDA VCRIEGRRQQ LADAFGMDDP 660 AHHAGAFERQ RSVTYSGLLL AAAQQNPRFV EGVERQLAEF VADKEAKRVS LSAMPREQRA 720 VVHALAEQYG LATTGYGQEP ARYVELFKTP AAGIPARLLS RVAPTVPASE VAQLLRESEG 780 HPMRLMDIAM SVDLRFYLRQ WEGAYRLEWQ GGDAAIVRFE REQDLKEALD VLGGGIRGLF 840 RIDRSWRPKT AVATAPPVPS SSASSRGWAG AEAGGNAPEG STWTAVAVAP RPAHNRPDAQ 900 QAAAAASGTE QQQEHRWAVM TGRRAARPAA AAAAAAGAGR NVLVEMVQEH EDAWTSDGSS 960 EESDG*

Sequence ? help Back to Top

Protein Sequence Length: 966 aa Download sequence Send to blast

MHQAQFAGRG PAAGQRQAAS APPELEQAQQ ARPVPQPRRR ERPPRPQQQQ QQQQRGAGSL  60
LRPLEAAASG AANDRQRRQQ AAPVAGGEPS SSSDAEGAGT QLGGQAQPQQ QAAAAGGLEA  120
AANTAAQPRQ EPRSRQRQER QAGERGADAA GDAAALDSSG AAGPQPPEPL PDAPHCLVCC  180
HEMAEVGIGA CNHKQVCGTC TLRLRLCYDR QDCPLCKAEL KEVIIAPWRP QLPDWQAFEQ  240
HPEWLARSAK WAHGSIWADR WRRGGRLSSR LLHDLQRRTA LACAVCDPGG EAPLARREHL  300
LVHVQEAHGL RLCSLCLQEG RLFPLELQAF PSLQALQAHS EAAHPHCGFC RRTFYDDDAL  360
WKHMHQAHFS CHVCPPPVAA HAYFNRAPDL LRHMRHAGRA APAPVAVAAP APAPAPALPC  420
GASEHFMCDE PECADCFVAF ATADELRRHQ LERHSARMPR WDSSRARPLQ LDISFARRQG  480
PLSAAEATAE RRRQRQRSRG PQDVRMMEGA RPGEGPPPDQ WPAGFEYARE ADGGLRVIDD  540
ADVPAAAYPG GGGGGGSGSG GGLMGAGSWA EHRPQRQQRG GGDFPSLSAA AAGEGGGGGG  600
AGSSRPPPLV KKTVKCPCGR RVSHYAVAEG QEVPPLECDA VCRIEGRRQQ LADAFGMDDP  660
AHHAGAFERQ RSVTYSGLLL AAAQQNPRFV EGVERQLAEF VADKEAKRVS LSAMPREQRA  720
VVHALAEQYG LATTGYGQEP ARYVELFKTP AAGIPARLLS RVAPTVPASE VAQLLRESEG  780
HPMRLMDIAM SVDLRFYLRQ WEGAYRLEWQ GGDAAIVRFE REQDLKEALD VLGGGIRGLF  840
RIDRSWRPKT AVATAPPVPS SSASSRGWAG AEAGGNAPEG STWTAVAVAP RPAHNRPDAQ  900
QAAAAASGTE QQQEHRWAVM TGRRAARPAA AAAAAAGAGR NVLVEMVQEH EDAWTSDGSS  960
EESDG*

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_005848564.1	0.0	hypothetical protein CHLNCDRAFT_145127
TrEMBL	E1ZCM9	0.0	E1ZCM9_CHLVA; Uncharacterized protein
STRING	XP_005848564.1	0.0	(Chlorella variabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Chlorophytae	OGCP4556	3	3

Link Out ? help Back to Top
Entrez Gene	17355654

Publications ? help Back to Top
Blanc G, et al. The Chlorella variabilis NC64A genome reveals adaptation to photosymbiosis, coevolution with viruses, and cryptic sex. Plant Cell, 2010. 22(9): p. 2943-55 [PMID:20852019]