PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000001.1_g00081.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 393aa    MW: 43740.5 Da    PI: 7.8723
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000001.1_g00081.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.91.9e-093063431954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              F+   ++yp+ +e+  LA+++gL+++qV++WF N R +
  Itr_sc000001.1_g00081.1 306 FQHflHPYPNDSEKLILASQTGLSKNQVSNWFINARVR 343
                              775569******************************88 PP
2BELL85.27.8e-28172237372
                     BELL   3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              +el++k+ kL+++leeV++rY+qy++q++ ++ssFea+ g    k+Y  lAl a+S+hF +L+dai++qi
  Itr_sc000001.1_g00081.1 172 NELEAKIMKLITMLEEVERRYEQYCHQMEELVSSFEAISG----KSYMVLALEAMSKHFCSLRDAIIGQI 237
                              699***********************************87....78***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005742.2E-21109235IPR006563POX domain
PfamPF075268.7E-29115233IPR006563POX domain
PROSITE profilePS5007111.742284347IPR001356Homeobox domain
CDDcd000867.90E-11287348No hitNo description
SMARTSM003892.9E-9287351IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.1E-27292353IPR009057Homeodomain-like
SuperFamilySSF466892.27E-17293354IPR009057Homeodomain-like
PfamPF059201.4E-16304343IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MVTQDSPSNP TEPSCNLQQL GTQNYDVFPP DLGSNAQFLG GRMPRSTRHF MDLLGASNDV  60
HNQAQKLSLS LGSCSLFPPS VQCRETSLNQ NNNIMNPGFM SYSLAGGSSA LAAPIADSKY  120
FRPARALLEE VASVGGQDTG VRYEKLMRRL SRNSKNGSLG IRSAVRLDFP TNELEAKIMK  180
LITMLEEVER RYEQYCHQME ELVSSFEAIS GKSYMVLALE AMSKHFCSLR DAIIGQINAT  240
RRRLSEETPT TGLHSHFSLF PPSSEAAMLQ KLSLQHLGLI QSSRQAWRPI RGLPETSVAI  300
LRAWLFQHFL HPYPNDSEKL ILASQTGLSK NQVSNWFINA RVRLWKPMIE EMYKEEFAES  360
SSADECDNLF GGSSSSKRSL RTTTQGAMNS AAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16293351563Homeobox protein Meis2
3k2a_B2e-16293351563Homeobox protein Meis2
4xrs_A2e-16293350158Homeobox protein Meis1
4xrs_B2e-16293350158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019152756.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD12e-85BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1S4D1N51e-120A0A1S4D1N5_TOBAC; BEL1-like homeodomain protein 11
STRINGXP_009592944.11e-121(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-86BEL1-like homeodomain 11