PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000002.1_g00047.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 92aa    MW: 10302.6 Da    PI: 9.3634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000002.1_g00047.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.74.2e-0823591854
                             HHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                      HLH 18 safeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                             +  ++L++llP++ + +s K s + +L+++++YI+sL
  Itr_sc000002.1_g00047.1 23 ELVSKLQQLLPELRSRRSSKASASKVLQETCNYIRSL 59
                             56689*******87999999999************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.014559IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-82075IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.23E-82178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-52359IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MSSRRSRQSS SGTSRISDDQ IIELVSKLQQ LLPELRSRRS SKASASKVLQ ETCNYIRSLH  60
REVDDLSDRL SQLLSTIDAD SPEAAIIRSL IT
Functional Description ? help Back to Top
Source Description
UniProtAtypical and probable non DNA-binding bHLH transcription factor that integrates multiple signaling pathways to regulate cell elongation and plant development. May have a regulatory role in various aspects of gibberellin-dependent growth and development. {ECO:0000269|PubMed:16527868}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185225.13e-56PREDICTED: transcription factor PRE6-like
SwissprotQ9LJX19e-41PRE5_ARATH; Transcription factor PRE5
TrEMBLA0A1U8FK004e-51A0A1U8FK00_CAPAN; Transcription factor PRE5
TrEMBLA0A2G2XD164e-51A0A2G2XD16_CAPBA; Transcription factor PRE5
TrEMBLA0A2G3A6454e-51A0A2G3A645_CAPAN; transcription factor PRE6-like
STRINGXP_009758713.11e-51(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA35324161
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28857.13e-20bHLH family protein