PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000002.1_g00050.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 240aa MW: 27060.2 Da PI: 6.6088

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000002.1_g00050.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	17.3	8.9e-06	46	93	2	53
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53 + + erE++ Rd++N f+eL ++l ++ ++ Ka iL+++++ +++ Itr_sc000002.1_g00050.1 46 KIHKAEREKQKRDNMNVLFAELAKVLDPS----HQNYGKACILKETMRLVRE 93 667889******************99887....7788888888888877666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	3.66E-12	43	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	11.242	44	94	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.7E-9	44	114	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
MDSEASTAVN DCAVHVVSRS SKRKHDKGPR KIHEAEREPR EKVPRKIHKA EREKQKRDNM 60 NVLFAELAKV LDPSHQNYGK ACILKETMRL VRELFVQVDN LRKENASLNS ESHYMTVEKD 120 ELKEEKSALE AQIENLQTEI NETIRSQTTN IDNITSPPQL TEDHLRTSIH DYASSSAAAT 180 GPVLVVPLHN DLQMYSTADN AEAVQNLPPS VSRPRPRYPS PSDSWPSRVL NVASSTTEDS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185301.1	1e-153	PREDICTED: transcription factor bHLH47-like isoform X2
TrEMBL	A0A1D9CF94	9e-63	A0A1D9CF94_VACCO; Transcription factor BHLH011 (Fragment)
STRING	XP_010257049.1	5e-59	(Nelumbo nucifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA4307	19	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	1e-30	bHLH family protein