PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000002.1_g00064.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Dof

Protein Properties

Length: 498aa MW: 53532.2 Da PI: 4.8713

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000002.1_g00064.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.9	2.7e-39	137	197	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCy+nny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s Itr_sc000002.1_g00064.1 137 PDKILPCPRCNSMETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSG 197 7899******************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	2.0E-30	130	194	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-31	139	195	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.789	141	195	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	143	179	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 498 aa Download sequence Send to blast
MSDSSKDPAI KLFGKTIQLP EIPASTAPAT EGSCPDDAPG DDSSARHGSG SGNDPAEDGG 60 GGEEDEHLQK NQNGGKLDES KEDESLMAEE LTDQTNEMET DELKMPSNNK DCGAMKKSEG 120 EEQGETGNSQ EKALKKPDKI LPCPRCNSME TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT 180 MRNVPVGAGR RKNKNSGSHY RHVTISEPFP SARVDLPNGI QLPTINPNGT LLTFGSDTPL 240 CESMASVLNI AEKTMQNGSI NGFHKLEELG VPVPHGAGDN GDDRSSGSSV TAASTKDESV 300 KNEVPGRQNC PNFAPQLPCF PGAPWPYPLT AVQWSSAIPP PGYCPPGFPM PVYPAPAYWG 360 CAVPGSWSVP WVSPPIAPQH HMPSTSGPNS PTLGKHSRDE NMLKPVNGEG EDPKKESNPE 420 KCLWVPKTLR IDDPEDAAKS SIWATLGIKN DKADSVGSGL FKAFQSKDDE KTDASENSTV 480 LQANPAALSR SLNFHENS

Sequence ? help Back to Top

Protein Sequence Length: 498 aa Download sequence Send to blast

MSDSSKDPAI KLFGKTIQLP EIPASTAPAT EGSCPDDAPG DDSSARHGSG SGNDPAEDGG  60
GGEEDEHLQK NQNGGKLDES KEDESLMAEE LTDQTNEMET DELKMPSNNK DCGAMKKSEG  120
EEQGETGNSQ EKALKKPDKI LPCPRCNSME TKFCYFNNYN VNQPRHFCKN CQRYWTAGGT  180
MRNVPVGAGR RKNKNSGSHY RHVTISEPFP SARVDLPNGI QLPTINPNGT LLTFGSDTPL  240
CESMASVLNI AEKTMQNGSI NGFHKLEELG VPVPHGAGDN GDDRSSGSSV TAASTKDESV  300
KNEVPGRQNC PNFAPQLPCF PGAPWPYPLT AVQWSSAIPP PGYCPPGFPM PVYPAPAYWG  360
CAVPGSWSVP WVSPPIAPQH HMPSTSGPNS PTLGKHSRDE NMLKPVNGEG EDPKKESNPE  420
KCLWVPKTLR IDDPEDAAKS SIWATLGIKN DKADSVGSGL FKAFQSKDDE KTDASENSTV  480
LQANPAALSR SLNFHENS

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00046	PBM	Transfer from AT5G39660	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019185496.1	0.0	PREDICTED: cyclic dof factor 2
Refseq	XP_019185497.1	0.0	PREDICTED: cyclic dof factor 2
TrEMBL	A0A068U1T1	0.0	A0A068U1T1_COFCA; Uncharacterized protein
STRING	VIT_14s0108g00980.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	1e-113	cycling DOF factor 2