PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000004.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MIKC_MADS
Protein Properties Length: 261aa    MW: 30231.3 Da    PI: 8.7132
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000004.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.99.7e-32959151
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                   SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                             krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Itr_sc000004.1_g00021.1  9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                             79***********************************************96 PP
2K-box70.36.2e-2470136369
                    K-box   3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                              + + ++ ++ +++s+++e+ kLk ++e+Lqr qRhllGedL++L++ e+++Le+qL++slk+iRs++
  Itr_sc000004.1_g00021.1  70 TLEVNRPNKDNEQSSYKEYLKLKGKYESLQRYQRHLLGEDLGPLNIDEIEHLEHQLDTSLKHIRSTR 136
                              566677788999****************************************************976 PP
3K-box14.12e-0615818969100
                    K-box  69 KnellleqieelqkkekelqeenkaLrkklee 100
                               ++++l+q+++lq kek   e+nk+L++klee
  Itr_sc000004.1_g00021.1 158 YTQMMLDQLSDLQTKEKLWLEANKTLESKLEE 189
                              589**************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.782161IPR002100Transcription factor, MADS-box
SMARTSM004322.7E-41160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-30271IPR002100Transcription factor, MADS-box
CDDcd002659.91E-42271No hitNo description
PRINTSPR004049.8E-33323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.5E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-332338IPR002100Transcription factor, MADS-box
PRINTSPR004049.8E-333859IPR002100Transcription factor, MADS-box
PfamPF014862.5E-2278187IPR002487Transcription factor, K-box
PROSITE profilePS5129712.28581193IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009611Biological Processresponse to wounding
GO:0048481Biological Processplant ovule development
GO:0071486Biological Processcellular response to high light intensity
GO:0071492Biological Processcellular response to UV-A
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 261 aa     Download sequence    Send to blast
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SKYQKCSYGT LEVNRPNKDN EQSSYKEYLK LKGKYESLQR YQRHLLGEDL GPLNIDEIEH  120
LEHQLDTSLK HIRSTRLWHN GKRLMLTIGI RLLVQYHYTQ MMLDQLSDLQ TKEKLWLEAN  180
KTLESKLEEF YVENNLQQPW GPGEQSGAYS QQHPDQTHGF FQPLECDSTL HIGFNPVATS  240
SQITAATNAQ NVNAVLPGWM L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A1e-26681871101Developmental protein SEPALLATA 3
4ox0_B1e-26681871101Developmental protein SEPALLATA 3
4ox0_C1e-26681871101Developmental protein SEPALLATA 3
4ox0_D1e-26681871101Developmental protein SEPALLATA 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB6002354e-57AB600235.1 Cyclamen persicum CpMADS1 mRNA for MADS-box transcription factor, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185726.11e-168PREDICTED: developmental protein SEPALLATA 1-like
SwissprotQ8LLR21e-116MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A484KS061e-143A0A484KS06_9ASTE; Uncharacterized protein
STRINGSolyc02g089200.2.11e-137(Solanum lycopersicum)
STRINGPGSC0003DMT4000034831e-137(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4024625
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02310.12e-76MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]