PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000004.1_g00037.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bZIP
Protein Properties Length: 174aa    MW: 20493.9 Da    PI: 6.9218
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000004.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1475.7e-1581131555
                              CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                   bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                              +++rr+++NRe+ArrsR RK+ +++eL   v  L +eN++L ++l++ ++ 
  Itr_sc000004.1_g00037.1  81 RKQRRMISNRESARRSRMRKQRQVDELWSQVVWLRNENHQLSDKLNHATER 131
                              689***************************************999887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003389.2E-1377141IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.35879142IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.05E-1281130No hitNo description
PfamPF001704.8E-1381131IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-1281153No hitNo description
CDDcd147027.82E-1982133No hitNo description
PROSITE patternPS0003608499IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MQPTESTELH YPLPPNQNQL PTHFNLSNTP NFPFQHFPIT LSNPLYHPLL QMNPQVQDFI  60
INSTSDEAEE HHQQQSLINE RKQRRMISNR ESARRSRMRK QRQVDELWSQ VVWLRNENHQ  120
LSDKLNHATE RHDQAVQENV QLKEEATGLR QMITEIQLHS PFPAAGCSLK DIHI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
193100RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019185268.14e-90PREDICTED: basic leucine zipper 43-like
SwissprotQ9FMC23e-43BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A2U1N9D41e-62A0A2U1N9D4_ARTAN; Basic-leucine zipper domain-containing protein
STRINGMigut.H00570.1.p4e-61(Erythranthe guttata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA9472492
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.12e-47basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]