PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000006.1_g00058.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family HD-ZIP
Protein Properties Length: 224aa    MW: 26142.4 Da    PI: 7.0315
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000006.1_g00058.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.72.7e-2068120456
                              -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
                 Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                              + ++t++qle Le+ F+++ +++ +++++LAk+lgL+ rq+ vWFqNrRa++k
  Itr_sc000006.1_g00058.1  68 KKRLTNDQLESLENNFQEEIKLDPDRKQRLAKELGLQPRQIAVWFQNRRARWK 120
                              5679************************************************9 PP
2HD-ZIP_I/II118.92.7e-3867157292
              HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeL 87 
                              kk+rl+++q+++LE++F+ee kL+p+rK++la+eLglqprq+avWFqnrRAR+ktkqlE+ y++Lk+ ++a+++e+++L++ev +L
  Itr_sc000006.1_g00058.1  67 KKKRLTNDQLESLENNFQEEIKLDPDRKQRLAKELGLQPRQIAVWFQNRRARWKTKQLERLYDSLKHDFEAVTREKQKLQEEVLTL 152
                              9************************************************************************************* PP

              HD-ZIP_I/II  88 reelk 92 
                              r+ lk
  Itr_sc000006.1_g00058.1 153 RSILK 157
                              *8877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.2E-1952124IPR009057Homeodomain-like
PROSITE profilePS5007117.62162122IPR001356Homeobox domain
SMARTSM003891.2E-1764126IPR001356Homeobox domain
CDDcd000862.47E-1667123No hitNo description
PfamPF000461.3E-1767120IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.603.6E-2169129IPR009057Homeodomain-like
PRINTSPR000316.9E-693102IPR000047Helix-turn-helix motif
PROSITE patternPS00027097120IPR017970Homeobox, conserved site
PRINTSPR000316.9E-6102118IPR000047Helix-turn-helix motif
PfamPF021832.7E-8122156IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEWNGNFTIP FVPRQPPTSQ DVSFNFLCGY NYNHYPGSIE MKNAMQSHNA VFPPLEKHGG  60
FGNPMDKKKR LTNDQLESLE NNFQEEIKLD PDRKQRLAKE LGLQPRQIAV WFQNRRARWK  120
TKQLERLYDS LKHDFEAVTR EKQKLQEEVL TLRSILKDQA TKKQVSTGYT EMSGEETVES  180
TSIPSSNCRA LQANTHQMAD CNFAFNVEEC NPLMQSYWET LPYQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114122RRARWKTKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186647.11e-162PREDICTED: putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A068V4481e-93A0A068V448_COFCA; Uncharacterized protein
STRINGXP_009758049.18e-93(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA38692246
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.13e-58homeobox 51