PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000009.1_g00017.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

Protein Properties

Length: 296aa MW: 33529.9 Da PI: 9.0211

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000009.1_g00017.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	36.8	7e-12	20	95	16	98
EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 l lp ++ + e++++ +l +++ +Wev++ g++++t+GW++Fv ++gL + +v+F+++g s+f +v+vf+ Itr_sc000009.1_g00017.1 20 LHLPPIISKKL--V-EQDIKEVLLTSQKGTWEVEI--HSFEGKHWFTNGWEDFVLQHGLSNRHIVLFEHTGGSSF--NVRVFD 95 55555554444..3.24455566777888****..889999***********************9999999..888886 PP
2	B3	43	7.9e-14	190	266	14	90
T-EE--HHH.HTT---..--SEEEEEETTS.-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 14 grlvlpkkfaeehggkkeesktltledesg.rsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 + +p +f+ ++g+ +++ + l+ +s+ ++ ++k+ ++++++ v+t+GW++F n+Lk+gD+++Fkl ++ s+ Itr_sc000009.1_g00017.1 190 PYMHIPADFCVANGLYNNG--RICLKGPSSkQEVSLKV--CRGGRTiyAVITRGWSDFIARNDLKVGDICTFKLRSTgSSS 266 4589*******988666..6*77736677777..777777789**********************98764544 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.0E-12	3	95	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	10.405	5	97	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	8.4E-15	7	95	IPR015300	DNA-binding pseudobarrel domain
SMART	SM01019	0.0044	8	97	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.9E-9	13	95	IPR003340	B3 DNA binding domain
CDD	cd10017	1.87E-8	17	95	No hit	No description
SuperFamily	SSF101936	9.02E-17	169	278	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	2.5E-17	169	279	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.82E-14	174	277	No hit	No description
SMART	SM01019	9.7E-10	176	279	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.391	177	279	IPR003340	B3 DNA binding domain
Pfam	PF02362	3.6E-11	190	267	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 296 aa Download sequence Send to blast
MDQKIPFFRV MNVAGTQTKL HLPPIISKKL VEQDIKEVLL TSQKGTWEVE IHSFEGKHWF 60 TNGWEDFVLQ HGLSNRHIVL FEHTGGSSFN VRVFDFASSC EVYFNGESKT KTKRVRTQGK 120 NAEDSSKVSV KLEDDIDEVL SPVKVEKHDH AYDKEDTKRK RKSEFVNVSS TGHPQFVTSI 180 KQYNVRRRSP YMHIPADFCV ANGLYNNGRI CLKGPSSKQE VSLKVCRGGR TIYAVITRGW 240 SDFIARNDLK VGDICTFKLR STGSSSNAVV FDVEVLRKST SCDNPCVKTE DDEKGS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192310.1	1e-123	PREDICTED: putative B3 domain-containing protein Os03g0621600 isoform X4

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA8536	16	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G17010.1	2e-13	B3 family protein