PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000009.1_g00019.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 365aa MW: 39316.8 Da PI: 8.4961

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000009.1_g00019.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	11.7	0.00048	219	257	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ +++ L +l+ + +K + a++L +A+ YI+ Lq Itr_sc000009.1_g00019.1 219 RKEKLGDRITALHQLVSPF-----GKTDTASVLLEAIGYIRFLQ 257 6677889999999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.515	207	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.19E-6	217	261	No hit	No description
SuperFamily	SSF47459	4.71E-10	217	268	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-7	221	263	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHHQPP PPPPPFLAPL 60 PTLFPSPPPA XPPPPLPSRP YPPPRGPITA TTNTSSRSHG ASFSCKGGLV GEEDKSGLSG 120 MQQLLSHASA AALVYDVKQE NPTNTYVYGG AHAGNAEFPA KSCVTSLSSN NMLDFSNKSD 180 ARHPPPDHSS ECNSTATGGA PAKKARIQPS STQSTFKVRK EKLGDRITAL HQLVSPFGKT 240 DTASVLLEAI GYIRFLQSQI EALSLPYLGN GSGNNMRHQQ QQQSFVQAER NCLFPEDPGQ 300 LLNDNCMKRK GTSDHHQPQD GDEEAKKDLR SRGLCLVPIS CTLQVGSDNG ADYWAPAAFG 360 GGFRS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MNRGVLQSSS LPVQQMMGGG SPNWWSIINN TMRPPLPHHQ LHHHHHHQPP PPPPPFLAPL  60
PTLFPSPPPA XPPPPLPSRP YPPPRGPITA TTNTSSRSHG ASFSCKGGLV GEEDKSGLSG  120
MQQLLSHASA AALVYDVKQE NPTNTYVYGG AHAGNAEFPA KSCVTSLSSN NMLDFSNKSD  180
ARHPPPDHSS ECNSTATGGA PAKKARIQPS STQSTFKVRK EKLGDRITAL HQLVSPFGKT  240
DTASVLLEAI GYIRFLQSQI EALSLPYLGN GSGNNMRHQQ QQQSFVQAER NCLFPEDPGQ  300
LLNDNCMKRK GTSDHHQPQD GDEEAKKDLR SRGLCLVPIS CTLQVGSDNG ADYWAPAAFG  360
GGFRS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019192305.1	1e-173	PREDICTED: transcription factor bHLH68-like isoform X2
Swissprot	Q8S3D1	1e-90	BH068_ARATH; Transcription factor bHLH68
TrEMBL	A0A328CW06	1e-137	A0A328CW06_9ASTE; Uncharacterized protein
STRING	cassava4.1_010267m	1e-128	(Manihot esculenta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA1519	22	47

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29100.1	1e-89	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Le Hir R, et al. AtbHLH68 transcription factor contributes to the regulation of ABA homeostasis and drought stress tolerance in Arabidopsis thaliana. Physiol Plant, 2017. 160(3): p. 312-327 [PMID:28369972] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]