PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000009.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 221aa    MW: 24370.9 Da    PI: 4.4527
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000009.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.2e-174899156
                      AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                             s y GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++ a+ +++ge
  Itr_sc000009.1_g00032.1 48 SSYVGVRMRA-WGKWVSEIREPKK---KSRIWLGTFATAEMAARAHDVAAVAIKGE 99
                             679****998.**********854...6**********************999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.28E-2848108No hitNo description
SuperFamilySSF541711.24E-2048107IPR016177DNA-binding domain
PfamPF008475.3E-114898IPR001471AP2/ERF domain
PROSITE profilePS5103221.60149106IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-3149107IPR001471AP2/ERF domain
SMARTSM003806.7E-3549112IPR001471AP2/ERF domain
PRINTSPR003672.8E-95061IPR001471AP2/ERF domain
PRINTSPR003672.8E-97288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MAESLYSRTE LSSSNNNNSC TTLLSATQNS NPNNHRKRLR QDGDNVASSY VGVRMRAWGK  60
WVSEIREPKK KSRIWLGTFA TAEMAARAHD VAAVAIKGEA ANLNFPELAG LLPRPASCSP  120
RDVRAAAIEA ARMDILLSRE PTAPEPASSS SSEIAAEPSQ DELGEIVELP ELAADTTYDD  180
FVFPDWDGWD WWPCSAADRA GEYYGEIVFD TGEFGNFLWQ H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1539107173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191757.11e-117PREDICTED: ethylene-responsive transcription factor TINY-like
TrEMBLA0A328E3514e-51A0A328E351_9ASTE; Uncharacterized protein
TrEMBLA0A484KVV54e-51A0A484KVV5_9ASTE; Uncharacterized protein
STRINGXP_009782186.13e-49(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA21224225
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.14e-34ERF family protein