PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000011.1_g00016.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 377aa    MW: 41190.3 Da    PI: 5.6702
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000011.1_g00016.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.91.2e-17284317134
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                              C +C  tkTp+WR gp g+ktLCnaCG++y++ +
  Itr_sc000011.1_g00016.1 284 CMHCEITKTPQWRAGPMGPKTLCNACGVRYKSGR 317
                              99*****************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.6E-16278328IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.438278314IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.1E-14282315IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577167.13E-15282341No hitNo description
CDDcd002022.73E-13283332No hitNo description
PfamPF003202.7E-15284317IPR000679Zinc finger, GATA-type
PROSITE patternPS003440284309IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MGSNFMDELD CGSFFDHIDD LIEFPPENEC VGVGSGDCNN FPSIWNDPLP DSEPLFSGSH  60
NNSASDLSAE LSVPEFCLML CFEFWNCLGF QLDCFSTSHF GSLGTAVDFS VYEDIIQLEW  120
LSTFVEDSFS GGGLTLGKEN APVNMEPPHK KFQTSSPVSV LESSSSSSSS SSCSGGKTIP  180
LSPSRCGAQR ARSKRPRPAT FNPRPAIQLI SPTSSFTEAP QPFVAPAVSS ESENFAESPM  240
KKLTTTRPEA PEQKKKKKIK FTIPIPPMDT NQNQNQPPQA IRKCMHCEIT KTPQWRAGPM  300
GPKTLCNACG VRYKSGRLFP EYRPAASPTF IPSLHSNSHK KVIEMRSKVG VENTAITETP  360
STPQPAFNPS NNPSVEF
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1193197KRPRP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019194126.10.0PREDICTED: GATA transcription factor 8-like
TrEMBLQ76DY31e-153Q76DY3_TOBAC; GATA transcription factor
STRINGXP_009598426.11e-154(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA23452358
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54810.22e-41GATA family protein