PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000014.1_g00018.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family B3
Protein Properties Length: 339aa    MW: 38365.1 Da    PI: 10.3028
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000014.1_g00018.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.84.5e-141796998
                             HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                       B3  9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                              ++ ++ + +p  f++++ +g+   + +  +  +  rsW+v++  ++++   +l++GW++F  +ngL++gD+vvF+ ++++ f   v+
  Itr_sc000014.1_g00018.1 17 QAF-KNGVDIPTAFLAKYlKGQ---GPKFAILRRGDRSWRVRI--SGGR---ILADGWEKFGAENGLNVGDVVVFRQERDTVF--DVS 93
                             344.4559**********6444...347889999*********..4444...89**********************5555555..887 PP

                             EE- CS
                       B3 96 vfr 98
                             vf+
  Itr_sc000014.1_g00018.1 94 VFE 96
                             776 PP
2B361.51.4e-19132220394
                              EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
                       B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                                +++s+ l+++ l+lp  fa+++g++ e++++++l+d + rsW+v l   +  +++ l+ GW+ F  angLkegD   F+l++ s
  Itr_sc000014.1_g00018.1 132 VSTIKSYCLRKSHLYLPLVFARSNGLVAEGKREMILRDDKERSWSVVL--GREANHFSLQHGWEAFQMANGLKEGDAYKFELIK-S 214
                              567899******************************************..********************************98.5 PP

                              EE..EE CS
                       B3  89 efelvv 94 
                              ++++  
  Itr_sc000014.1_g00018.1 215 GEKPIA 220
                              655655 PP
3B358.61.1e-18240330497
                              E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                       B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                              ++++++ l++++l+lp +fa+++g+  ee+++++l+d + rsW v l     ++++ l +GW+ F  angLkegD   F+l++ s+
  Itr_sc000014.1_g00018.1 240 ATIKPYCLRKSQLYLPLEFARSNGLMAEEKREMILRDDKERSWPVVL--GTMGRHVSLLRGWQAFRMANGLKEGDAYKFELIK-SG 322
                              5678999****************9999999*****************..88888899999*********************98.77 PP

                              E..EEEEE CS
                       B3  90 felvvkvf 97 
                              +++  k++
  Itr_sc000014.1_g00018.1 323 KKPIAKFH 330
                              77777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.2E-204100IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-186104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.717898IPR003340B3 DNA binding domain
CDDcd100171.50E-14995No hitNo description
SMARTSM010191.3E-101198IPR003340B3 DNA binding domain
PfamPF023621.1E-101893IPR003340B3 DNA binding domain
SuperFamilySSF1019361.12E-17126219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.1E-18126219IPR015300DNA-binding pseudobarrel domain
CDDcd100172.35E-17129219No hitNo description
SMARTSM010193.3E-20130226IPR003340B3 DNA binding domain
PROSITE profilePS5086313.493130225IPR003340B3 DNA binding domain
PfamPF023628.5E-18131220IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.5E-21229330IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-20231330IPR015300DNA-binding pseudobarrel domain
CDDcd100172.72E-17236326No hitNo description
PROSITE profilePS5086313.465237332IPR003340B3 DNA binding domain
SMARTSM010194.1E-21238333IPR003340B3 DNA binding domain
PfamPF023621.7E-17240332IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MKTIPPKNPH FIKPIHQAFK NGVDIPTAFL AKYLKGQGPK FAILRRGDRS WRVRISGGRI  60
LADGWEKFGA ENGLNVGDVV VFRQERDTVF DVSVFEPSLC ERDCPVPQPS KKFRSAARET  120
TSTPPADHPY FVSTIKSYCL RKSHLYLPLV FARSNGLVAE GKREMILRDD KERSWSVVLG  180
REANHFSLQH GWEAFQMANG LKEGDAYKFE LIKSGEKPIA KLSSLGTTSS SSAENPHFVA  240
TIKPYCLRKS QLYLPLEFAR SNGLMAEEKR EMILRDDKER SWPVVLGTMG RHVSLLRGWQ  300
AFRMANGLKE GDAYKFELIK SGKKPIAKFH SRHISGEEN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176568.10.0PREDICTED: B3 domain-containing protein REM17-like isoform X3
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA32215171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.19e-58B3 family protein