PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000014.1_g00021.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family Trihelix
Protein Properties Length: 210aa    MW: 23701.9 Da    PI: 5.0034
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000014.1_g00021.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix32.72e-101684270
                 trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekk 70
                             Wt qe l+L++  + +e + + + +  ++W+   +++ +  + rs  qCk kwe+l  +y+++k +e k
  Itr_sc000014.1_g00021.1 16 WTLQESLTLVNEIKAVEAEAGGTMSSFQKWQLTVEHCNALEVCRSMDQCKRKWESLLDDYRRVKPWEAK 84
                             ******************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.0E-81583No hitNo description
PROSITE profilePS500906.3421672IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MERGSRRTRS QAAPDWTLQE SLTLVNEIKA VEAEAGGTMS SFQKWQLTVE HCNALEVCRS  60
MDQCKRKWES LLDDYRRVKP WEAKFWTASF GDRRRKELGL PEGFDLELFE AVDAYVKMQG  120
MDVGGADTDP DQDSDPEAQP DDSLIFLERG MHCRLAALIT KYSITLANEQ GFRIRERLIG  180
LLGLNPSAIG NLAHPRAGSI ICLRLVIDVN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019176578.11e-104PREDICTED: trihelix transcription factor ASR3
TrEMBLA0A484N4F14e-73A0A484N4F1_9ASTE; Uncharacterized protein
STRINGXP_009603649.16e-55(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA83602124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.12e-43sequence-specific DNA binding transcription factors