PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000015.1_g00005.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family LBD
Protein Properties Length: 191aa    MW: 20684.6 Da    PI: 7.4656
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000015.1_g00005.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260141.62.5e-4471061100
                   DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqq 86 
                              +Ca+Ck+lrr+CakdC++apyfp ++p+kfa+vhk+FGasn++k+l++lp ++r da+sslvyeA+ar+rdPv+G+vg i+ lq+q
  Itr_sc000015.1_g00005.1   7 PCASCKLLRRRCAKDCIFAPYFPPDDPHKFAIVHKVFGASNISKMLQELPVQQRADAVSSLVYEANARMRDPVHGCVGAISYLQNQ 92 
                              7************************************************************************************* PP

                   DUF260  87 leqlkaelallkee 100
                              ++ql+ +la++++e
  Itr_sc000015.1_g00005.1  93 VSQLQMQLAVAQAE 106
                              *********99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089127.0316107IPR004883Lateral organ boundaries, LOB
PfamPF031959.4E-447104IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MGGGSSPCAS CKLLRRRCAK DCIFAPYFPP DDPHKFAIVH KVFGASNISK MLQELPVQQR  60
ADAVSSLVYE ANARMRDPVH GCVGAISYLQ NQVSQLQMQL AVAQAEILCI QMQHQEPAAI  120
LPPHHQLYGV GDDKSSLLVS TTSTAAANIN AAFTSNLDTL QQLQYQLAGF TSSSNPAAAT  180
QDPLKRESLW T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-4831087112LOB family transfactor Ramosa2.1
5ly0_B6e-4831087112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019163016.11e-109PREDICTED: LOB domain-containing protein 12
SwissprotQ8LBW37e-81LBD12_ARATH; LOB domain-containing protein 12
TrEMBLA0A2G9I6Q44e-87A0A2G9I6Q4_9LAMI; Uncharacterized protein
STRINGAquca_030_00227.12e-86(Aquilegia coerulea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA4324669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30130.12e-79LBD family protein
Publications ? help Back to Top
  1. Penfield S, et al.
    Reserve mobilization in the Arabidopsis endosperm fuels hypocotyl elongation in the dark, is independent of abscisic acid, and requires PHOSPHOENOLPYRUVATE CARBOXYKINASE1.
    Plant Cell, 2004. 16(10): p. 2705-18
    [PMID:15367715]