PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000017.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 321aa    MW: 35789.3 Da    PI: 5.6743
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000017.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.92e-092492832155
                              HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
                 Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                              k +yps++++  LA+++gL+++q+ +WF N+R ++
  Itr_sc000017.1_g00027.1 249 KWPYPSESQKLALAESTGLDQKQINNWFINQRKRH 283
                              569*****************************885 PP
2ELK41.33.2e-14203224122
                      ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                              ELK qLlrKYsgyLgsLkqEF+
  Itr_sc000017.1_g00027.1 203 ELKGQLLRKYSGYLGSLKQEFM 224
                              9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012557.7E-1966110IPR005540KNOX1
PfamPF037904.0E-2268106IPR005540KNOX1
SMARTSM012565.1E-26115166IPR005541KNOX2
PfamPF037912.1E-21119165IPR005541KNOX2
PROSITE profilePS5121311.174203223IPR005539ELK domain
PfamPF037895.2E-11203224IPR005539ELK domain
SMARTSM011882.8E-8203224IPR005539ELK domain
PROSITE profilePS5007112.957223286IPR001356Homeobox domain
SMARTSM003891.2E-12225290IPR001356Homeobox domain
SuperFamilySSF466891.33E-19225300IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-28228288IPR009057Homeodomain-like
CDDcd000862.68E-12235287No hitNo description
PfamPF059207.3E-17243282IPR008422Homeobox KN domain
PROSITE patternPS000270261284IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009934Biological Processregulation of meristem structural organization
GO:0048440Biological Processcarpel development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MESGGGSIAS LCPMMMMMPS STDQDNNNNN SNQNNEGSAG YFVDNNNNGG GGGGGEEGKC  60
SSSSSTSVKA KIMAHPHYHR LLAAYLNCQK IGAPPEVVAR LEEACASMAS MGRAGGTCLG  120
EDPALDQFME AYCEMLTKYE QELSKPFKEA MLFLSRIESQ FKALTLPCSS ESAGADAMDR  180
NVSSEEEVDV TTGFIDPQVE DRELKGQLLR KYSGYLGSLK QEFMKKRKKG KLPKEARQQL  240
LDWWTRHYKW PYPSESQKLA LAESTGLDQK QINNWFINQR KRHWKPSEDM QFVVMDTAHP  300
HYYMDNVLGN PFSMDITPTL L
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1218227LKQEFMKKRK
2224228KKRKK
Functional Description ? help Back to Top
Source Description
UniProtPossible transcription activator involved in early embryonic development. Probably binds to the DNA sequence 5'-TGAC-3'.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB2830270.0AB283027.1 Ipomoea batatas Ibkn1 mRNA for class-I knotted1-like homeobox protein IBKN1, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019171485.10.0PREDICTED: homeobox protein knotted-1-like LET6
SwissprotP466081e-145HSBH1_SOYBN; Homeobox protein SBH1
TrEMBLA8QXP50.0A8QXP5_IPOBA; Class-I knotted1-like homeobox protein IBKN1
STRINGXP_002518420.11e-161(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA68352433
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62360.11e-136KNOX/ELK homeobox transcription factor
Publications ? help Back to Top
  1. Shu Y, et al.
    GmSBH1, a homeobox transcription factor gene, relates to growth and development and involves in response to high temperature and humidity stress in soybean.
    Plant Cell Rep., 2015. 34(11): p. 1927-37
    [PMID:26205508]