PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000018.1_g00042.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 424aa MW: 46258.1 Da PI: 7.2254

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000018.1_g00042.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	95.9	2.9e-30	207	266	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dg++WrKYGqK kg+++pr+YYrCt a gCpv+k+v+r+ ed +++++tYeg+Hnh+ Itr_sc000018.1_g00042.1 207 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCLEDRSILITTYEGTHNHP 266 58*************************99**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-32	192	268	IPR003657	WRKY domain
SuperFamily	SSF118290	7.85E-28	200	268	IPR003657	WRKY domain
PROSITE profile	PS50811	29.057	202	268	IPR003657	WRKY domain
SMART	SM00774	1.2E-36	207	267	IPR003657	WRKY domain
Pfam	PF03106	2.8E-27	208	266	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MLQSNAAEGE ISTGSSLSEN QKTEELSVLQ REMKRMKEEN KALRDAVEQT MKDFHDLHQK 60 FSSIQQNNNH EDKGFAKDFL TLSGTDETRN HRELQERSHL ITSDPSPEDG GDEDGDGDGE 120 LGLSLTLKSS SSSSSLIGRR MHGEGEERGE KSKAEEMNST TGFTPTPPQP PPAAMIQNNP 180 PPGFTATSPP NKKTRVSVRA RCDAATMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP 240 VRKQVQRCLE DRSILITTYE GTHNHPLPVG ATAMASTASA ASFMSHLDST NPISNLNHAF 300 LIPNYNHNPH LIINPNHPSS HLNIPNLVRN NIPASNPSSS SPSPHFWGPK LPDHHHHRQI 360 ELRRSNGGDG TGDNTNKNDN NNKVVVADHQ NMSAAIAADP KFRVAVAAAL SSLISTKDQA 420 HASS

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MLQSNAAEGE ISTGSSLSEN QKTEELSVLQ REMKRMKEEN KALRDAVEQT MKDFHDLHQK  60
FSSIQQNNNH EDKGFAKDFL TLSGTDETRN HRELQERSHL ITSDPSPEDG GDEDGDGDGE  120
LGLSLTLKSS SSSSSLIGRR MHGEGEERGE KSKAEEMNST TGFTPTPPQP PPAAMIQNNP  180
PPGFTATSPP NKKTRVSVRA RCDAATMNDG CQWRKYGQKI AKGNPCPRAY YRCTVAPGCP  240
VRKQVQRCLE DRSILITTYE GTHNHPLPVG ATAMASTASA ASFMSHLDST NPISNLNHAF  300
LIPNYNHNPH LIINPNHPSS HLNIPNLVRN NIPASNPSSS SPSPHFWGPK LPDHHHHRQI  360
ELRRSNGGDG TGDNTNKNDN NNKVVVADHQ NMSAAIAADP KFRVAVAAAL SSLISTKDQA  420
HASS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	8e-21	194	270	1	76	WRKY transcription factor 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019169959.1	0.0	PREDICTED: probable WRKY transcription factor 9
TrEMBL	A0A2G2XXX3	1e-101	A0A2G2XXX3_CAPAN; Uncharacterized protein
STRING	XP_009800949.1	6e-99	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7287	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68150.1	9e-53	WRKY DNA-binding protein 9