PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000018.1_g00098.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ARF
Protein Properties Length: 690aa    MW: 77501.6 Da    PI: 6.814
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000018.1_g00098.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.98.1e-23127227198
                              EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-E CS
                       B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDf 79 
                              f+k+lt sd++++g +++ +++a+e+       +++    ++l+ +d++g++W +++i+r++++r++lt+GW+ Fv+a++L +gD 
  Itr_sc000018.1_g00098.1 127 FCKTLTASDTSTHGGFSVLRRHADEClppldmsQQP--PWQELVSTDLHGNEWHFRHIFRGQPRRHLLTTGWSVFVSAKKLVAGDA 210
                              99****************************964333..3458999***************************************** PP

                              EEEEE-SSSEE..EEEEE- CS
                       B3  80 vvFkldgrsefelvvkvfr 98 
                              ++F   + +++el+v+v+r
  Itr_sc000018.1_g00098.1 211 FIFL--RGENGELRVGVRR 227
                              ****..449999*****97 PP
2Auxin_resp112.54.1e-37253335183
               Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                              a+ha++t++ F+v+Y+Pr+s+seF v+v+k+ +a ++k+svGmRfkm+fe+e+++err+sGt+vgv+d  ++rWp+SkWrsLk
  Itr_sc000018.1_g00098.1 253 ASHAINTGTLFSVFYRPRTSRSEFLVSVNKYIEAQNHKLSVGMRFKMRFEGEEVPERRFSGTIVGVEDNPSSRWPDSKWRSLK 335
                              789******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.97E-43116256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-40123242IPR015300DNA-binding pseudobarrel domain
CDDcd100175.90E-20125227No hitNo description
PROSITE profilePS5086311.124127229IPR003340B3 DNA binding domain
PfamPF023621.7E-20127227IPR003340B3 DNA binding domain
SMARTSM010192.1E-21127229IPR003340B3 DNA binding domain
PfamPF065074.2E-35253335IPR010525Auxin response factor
PfamPF023092.8E-11538633IPR033389AUX/IAA domain
PROSITE profilePS5174526.411543635IPR000270PB1 domain
SuperFamilySSF542777.36E-12545624No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009733Biological Processresponse to auxin
GO:0010150Biological Processleaf senescence
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 690 aa     Download sequence    Send to blast
MAHVVANQFN KGAYPASPHD PLYKELWHAC AGPLVTLPRE GERVYYFPQG HMEQLEASTH  60
QGLDQQLPSF NLPAKILCKV MNVFLRAEPE TDEVYAQVTL LPEPEQSEVT SPDPPLPEPE  120
QCNVHSFCKT LTASDTSTHG GFSVLRRHAD ECLPPLDMSQ QPPWQELVST DLHGNEWHFR  180
HIFRGQPRRH LLTTGWSVFV SAKKLVAGDA FIFLRGENGE LRVGVRRLMR QLNNMPSSVI  240
SSHSMHLGVL ATASHAINTG TLFSVFYRPR TSRSEFLVSV NKYIEAQNHK LSVGMRFKMR  300
FEGEEVPERR FSGTIVGVED NPSSRWPDSK WRSLKVQWDE PSSIVRPDRV SPWEIEALVT  360
STPQIVQPPQ RNKRARPANL PPSISEFSVL GTWKSPVDSP SSFPYCDTSR GTDLFPSPKL  420
SSGSKANNLA YSENGSLPPV SSRSMCCSNQ PETDSTAPVS EKKQANGYRL FGIQLMDHST  480
VRDTSLTAPQ PMVEDCPVLC LDSESDQHSE PSNPTRSEVP ELSFEHEKSS LRSPNESHSK  540
QIRSCTKVHM QGKAVGRAVD LTRFEGYEDL LRKFEEMFEI KGELCGSIKK WQVVYTDDED  600
DVMMVGDDPW HEFCNMVRKI NIYTIEEAKM LSPKIKLPVN EVKSSKPVSD SSVGTEELVA  660
FSCQARSKVC WRDKSAAKRF KVGWGSILSG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A0.02035817355Auxin response factor 1
4ldw_A0.02035817355Auxin response factor 1
4ldw_B0.02035817355Auxin response factor 1
4ldx_A0.02035817355Auxin response factor 1
4ldx_B0.02035817355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Seems to act as transcriptional repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Acts as repressor of IAA2, IAA3 and IAA7. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:16176952}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00097PBMTransfer from AT1G59750Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019168999.10.0PREDICTED: auxin response factor 1-like
RefseqXP_019169000.10.0PREDICTED: auxin response factor 1-like
SwissprotQ8L7G00.0ARFA_ARATH; Auxin response factor 1
TrEMBLA0A328DV340.0A0A328DV34_9ASTE; Auxin response factor
STRINGXP_009627009.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA58381923
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59750.20.0auxin response factor 1
Publications ? help Back to Top
  1. Montesinos JC,Pastor-Cantizano N,Robinson DG,Marcote MJ,Aniento F
    Arabidopsis p24δ5 and p24δ9 facilitate Coat Protein I-dependent transport of the K/HDEL receptor ERD2 from the Golgi to the endoplasmic reticulum.
    Plant J., 2014. 80(6): p. 1014-30
    [PMID:25312353]
  2. Marais C, et al.
    The Qb-SNARE Memb11 interacts specifically with Arf1 in the Golgi apparatus of Arabidopsis thaliana.
    J. Exp. Bot., 2015. 66(21): p. 6665-78
    [PMID:26208648]
  3. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  4. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]