PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000019.1_g00030.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

WRKY

Protein Properties

Length: 507aa MW: 54197.6 Da PI: 8.739

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000019.1_g00030.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	94.2	9.6e-30	269	327	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+++d v+++tY g+Hnh+ Itr_sc000019.1_g00030.1 269 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAvGCPVRKQVQRCSDDRAVLKTTYDGTHNHP 327 7*********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.8E-32	253	329	IPR003657	WRKY domain
SuperFamily	SSF118290	3.66E-27	261	329	IPR003657	WRKY domain
PROSITE profile	PS50811	28.874	263	329	IPR003657	WRKY domain
SMART	SM00774	5.9E-35	268	328	IPR003657	WRKY domain
Pfam	PF03106	5.0E-26	270	327	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence Send to blast
MEKGGWGLTL KSSESVEIFI EKRAKTLNEV DFFSEKRPPP PAAVLVKKEM PDLNVNTGLE 60 LVIANNGGKE NQSIVDDCAA APEMERRAAK SEVGRLQGEL ERMKDENQRL KGMLSQATDT 120 YGALRMYFLT LVDQQQQQTS TTYEVADGKR TVTARQFLDT AAGAAAAGGQ TDEGSHNSRT 180 SSGERTESES GGNKVEAAVS RSHEGSIGRS KEESADSETW RPNKVPRLLN PPSKPVDDED 240 QAAAAASAAA TMRKARVSVR ARSEASMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC 300 PVRKQVQRCS DDRAVLKTTY DGTHNHPLPP AAMAMASTTS AAANMLLSGA VPSGDVMMNP 360 NFYGRAIFPS GSIATISASA PFPTITLDLT HQPLNSLPNY TRPPIAHFPF SNAPQNPQNY 420 VSTPQVFGQA GLYNNHSKFS GLQVSNTLQH PSFAHGGATT AAAITADPNF TAALAAAISS 480 IINGSKHIPA HNNPSSNSNQ TSSLPAK

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence Send to blast

MEKGGWGLTL KSSESVEIFI EKRAKTLNEV DFFSEKRPPP PAAVLVKKEM PDLNVNTGLE  60
LVIANNGGKE NQSIVDDCAA APEMERRAAK SEVGRLQGEL ERMKDENQRL KGMLSQATDT  120
YGALRMYFLT LVDQQQQQTS TTYEVADGKR TVTARQFLDT AAGAAAAGGQ TDEGSHNSRT  180
SSGERTESES GGNKVEAAVS RSHEGSIGRS KEESADSETW RPNKVPRLLN PPSKPVDDED  240
QAAAAASAAA TMRKARVSVR ARSEASMISD GCQWRKYGQK MAKGNPCPRA YYRCTMAVGC  300
PVRKQVQRCS DDRAVLKTTY DGTHNHPLPP AAMAMASTTS AAANMLLSGA VPSGDVMMNP  360
NFYGRAIFPS GSIATISASA PFPTITLDLT HQPLNSLPNY TRPPIAHFPF SNAPQNPQNY  420
VSTPQVFGQA GLYNNHSKFS GLQVSNTLQH PSFAHGGATT AAAITADPNF TAALAAAISS  480
IINGSKHIPA HNNPSSNSNQ TSSLPAK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2ayd_A	6e-21	255	331	1	76	WRKY transcription factor 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the control of processes related to senescence and pathogen defense (PubMed:12000796). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (PubMed:12000796). Activates the transcription of the SIRK gene and represses its own expression and that of the WRKY42 genes (PubMed:12000796). Modulates phosphate homeostasis and Pi translocation by regulating PHO1 expression (PubMed:25733771). {ECO:0000269\|PubMed:12000796, ECO:0000269\|PubMed:25733771}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By salicylic acid, ethylene, jasmonic acid, pathogens, wounding and strongly during leaf senescence. {ECO:0000269\|PubMed:11449049, ECO:0000269\|PubMed:11722756}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019168717.1	0.0	PREDICTED: probable WRKY transcription factor 31
Swissprot	Q9C519	1e-119	WRKY6_ARATH; WRKY transcription factor 6
TrEMBL	A0A1S3Z416	1e-145	A0A1S3Z416_TOBAC; probable WRKY transcription factor 31 isoform X2
TrEMBL	A0A1U7WGI9	1e-145	A0A1U7WGI9_NICSY; probable WRKY transcription factor 31 isoform X2
STRING	XP_009776375.1	1e-146	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA945	24	92

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G62300.1	2e-86	WRKY family protein

Publications ? help Back to Top
Zhou F, et al. High humidity suppresses ssi4-mediated cell death and disease resistance upstream of MAP kinase activation, H2O2 production and defense gene expression. Plant J., 2004. 39(6): p. 920-32 [PMID:15341634] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Singh V,Roy S,Singh D,Nandi AK Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes. J. Biosci., 2014. 39(1): p. 119-26 [PMID:24499796] Ali MA,Wieczorek K,Kreil DP,Bohlmann H The beet cyst nematode Heterodera schachtii modulates the expression of WRKY transcription factors in syncytia to favour its development in Arabidopsis roots. PLoS ONE, 2014. 9(7): p. e102360 [PMID:25033038] Chai J,Liu J,Zhou J,Xing D Mitogen-activated protein kinase 6 regulates NPR1 gene expression and activation during leaf senescence induced by salicylic acid. J. Exp. Bot., 2014. 65(22): p. 6513-28 [PMID:25210078] Vermeirssen V,De Clercq I,Van Parys T,Van Breusegem F,Van de Peer Y Arabidopsis ensemble reverse-engineered gene regulatory network discloses interconnected transcription factors in oxidative stress. Plant Cell, 2014. 26(12): p. 4656-79 [PMID:25549671] Xiao D, et al. SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1275-91 [PMID:26304848] Bakshi M, et al. WRKY6 restricts Piriformospora indica-stimulated and phosphate-induced root development in Arabidopsis. BMC Plant Biol., 2015. 15: p. 305 [PMID:26718529] Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development. PLoS Genet., 2016. 12(2): p. e1005833 [PMID:26829043] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116] Li H, et al. BZR1 Positively Regulates Freezing Tolerance via CBF-Dependent and CBF-Independent Pathways in Arabidopsis. Mol Plant, 2017. 10(4): p. 545-559 [PMID:28089951] Stetter MG,Benz M,Ludewig U Increased root hair density by loss of WRKY6 in Arabidopsis thaliana. PeerJ, 2017. 5: p. e2891 [PMID:28149680] Zhou X, et al. StMYB44 negatively regulates phosphate transport by suppressing expression of PHOSPHATE1 in potato. J. Exp. Bot., 2017. 68(5): p. 1265-1281 [PMID:28338870] Bakshi M, et al. Piriformospora indica Reprograms Gene Expression in Arabidopsis Phosphate Metabolism Mutants But Does Not Compensate for Phosphate Limitation. Front Microbiol, 2017. 8: p. 1262 [PMID:28747898] Zhang Y, et al. DELLA proteins negatively regulate dark-induced senescence and chlorophyll degradation in Arabidopsis through interaction with the transcription factor WRKY6. Plant Cell Rep., 2018. 37(7): p. 981-992 [PMID:29574486]