PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000019.1_g00038.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

G2-like

Protein Properties

Length: 216aa MW: 24568.7 Da PI: 6.9613

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000019.1_g00038.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.4e-32	25	78	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWt+eLH+rFv+ave+LGG+e+AtPk +l+lm+vk +t++hvkSHLQ+YR+ Itr_sc000019.1_g00038.1 25 PRLRWTEELHRRFVHAVERLGGEERATPKLVLQLMDVKEITIAHVKSHLQMYRS 78 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.569	21	81	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	3.2E-31	21	80	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.08E-16	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.7E-24	25	79	IPR006447	Myb domain, plants
Pfam	PF00249	3.2E-8	26	77	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 216 aa Download sequence Send to blast
MRVSPENSRL PASGCTRTYA RSKAPRLRWT EELHRRFVHA VERLGGEERA TPKLVLQLMD 60 VKEITIAHVK SHLQMYRSMK HEQKMKETRV EQNYLVSSRT PYNYPNPPHY SGQEEAMPPS 120 FLPTLWQEEG PTIMFMDVLN GSNVQGIIRN DDGNMEEVAD ATMGYYANKF SAATSVTTKN 180 YAHEESASTM SFSSHIKACS DSEPSYNNLF LDLTLG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	6e-17	26	81	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	6e-17	26	81	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	6e-17	26	81	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	6e-17	26	81	3	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	6e-17	26	81	4	59	Protein PHOSPHATE STARVATION RESPONSE 1

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019170413.1	2e-73	PREDICTED: uncharacterized protein LOC109165929
TrEMBL	A0A2G3D764	2e-38	A0A2G3D764_CAPCH; Putative transcription factor RL9
STRING	XP_009782820.1	8e-39	(Nicotiana sylvestris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7450	20	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G38300.1	1e-28	G2-like family protein