PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000019.1_g00039.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family G2-like
Protein Properties Length: 199aa    MW: 22346.1 Da    PI: 6.4034
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000019.1_g00039.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like38.82.1e-122144225
                  G2-like  2 prlrWtpeLHerFveaveqLGGse 25
                             prlrWt+eLH+rFv+ave+LGG+e
  Itr_sc000019.1_g00039.1 21 PRLRWTEELHRRFVHAVERLGGEE 44
                             8*********************97 PP
2G2-like48.81.6e-15661031555
                  G2-like  15 veaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                              v+av+ L    +AtPk +l+lm+vk +t++h+kSHLQ+YR 
  Itr_sc000019.1_g00039.1  66 VRAVTDL---LRATPKLVLQLMDVKEITIAHIKSHLQMYRR 103
                              7788888...89****************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.5E-2817104IPR009057Homeodomain-like
SuperFamilySSF466895.55E-121945IPR009057Homeodomain-like
TIGRFAMsTIGR015573.9E-82145IPR006447Myb domain, plants
PfamPF002491.2E-522102IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.0E-1074103IPR006447Myb domain, plants
SuperFamilySSF466895.55E-1276104IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MRVSPENSRV SASGGTKSKA PRLRWTEELH RRFVHAVERL GGEESSGDGF PVGNPEDRVV  60
GVVGSVRAVT DLLRATPKLV LQLMDVKEIT IAHIKSHLQM YRRMKHNKQK MKETRVEQNY  120
VVSNSTPYRE QHEAIPPSFL PAIWQEDEPT MMFMDVVSAS NVQGRNDDYA HEESASMMSF  180
SSDNSESSSD NLSIDLTLG
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA74502029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16560.14e-20G2-like family protein