PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000021.1_g00026.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family MYB_related
Protein Properties Length: 87aa    MW: 9902.08 Da    PI: 8.8933
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000021.1_g00026.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding29.71.5e-09651346
                             SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
          Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                             +WT+   +++ +a + + ++   +W+  ar +g g+t++++k ++ +
  Itr_sc000021.1_g00026.1  6 AWTAKQNKRFENALAVYDKDtpdRWRNLARAVG-GKTEEEVKRHYEM 51
                             8********************************.***********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.728257IPR017884SANT domain
SMARTSM007175.3E-7355IPR001005SANT/Myb domain
CDDcd001673.49E-6653No hitNo description
Gene3DG3DSA:1.10.10.601.1E-5659IPR009057Homeodomain-like
PfamPF002491.5E-6652IPR001005SANT/Myb domain
SuperFamilySSF466891.25E-12760IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 87 aa     Download sequence    Send to blast
MASSSAWTAK QNKRFENALA VYDKDTPDRW RNLARAVGGK TEEEVKRHYE MLVEDINHIE  60
SGKVPLPNYD AVKGSSSSYA LMQQEKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A4e-33275679RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175205.12e-50PREDICTED: protein RADIALIS-like 4
SwissprotF4JVB81e-33RADL1_ARATH; Protein RADIALIS-like 1
SwissprotQ1A1731e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A068UG095e-41A0A068UG09_COFCA; Uncharacterized protein
STRINGXP_007160753.12e-39(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA20224231
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.13e-36RAD-like 6
Publications ? help Back to Top
  1. Zhang M, et al.
    ROOT HAIR DEFECTIVE3 family of dynamin-like GTPases mediates homotypic endoplasmic reticulum fusion and is essential for Arabidopsis development.
    Plant Physiol., 2013. 163(2): p. 713-20
    [PMID:23922269]