PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000021.1_g00041.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

bHLH

Protein Properties

Length: 421aa MW: 44423.2 Da PI: 8.284

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000021.1_g00041.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.6	5.9e-05	307	345	12	55
HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 R +++ ++++ L++l+ + +K + a++L +A+ YIk Lq Itr_sc000021.1_g00041.1 307 RKEKLGDRIAALQQLVAPF-----GKTDTASVLMEAIGYIKFLQ 345 7788899*******998.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.299	295	344	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.97E-5	305	349	No hit	No description
SuperFamily	SSF47459	4.19E-11	305	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.5E-9	309	359	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence Send to blast
MESAHLHNHH HHHHQQFQDP PPPSSSSPSS SYGGVSTSST AHSWTPNTTL LSGGGGGGGL 60 SSLYANGVAA GSFLSSRNHH QPMAQDLSFH HWANAAAAAG FAGGGGGSGQ GIKQELSSAP 120 DCYPPRLAAD MQNTLDAKLL LGTLSGGGHQ PAAAAGAGHQ FYGSSAASSN SNANRGRFSQ 180 IYPTISVPSL NIEEASSLAN STSLGMNLQA LDLFNSARIN GAFVAHTSPD HQHLGFHNYG 240 FDHHHLQQSS QRPFPSNVSS PLFSHATVAI SADPKRPCNL VEPNPPQAPP KKSRLDSRAS 300 CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET LSVPYMKLSR 360 NKSSGRAMQG GQEENIGSEE ARRDLRSRGL CLVPLSCLSY VTDSGGGVWP PPSLEHFSPI 420 Q

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence Send to blast

MESAHLHNHH HHHHQQFQDP PPPSSSSPSS SYGGVSTSST AHSWTPNTTL LSGGGGGGGL  60
SSLYANGVAA GSFLSSRNHH QPMAQDLSFH HWANAAAAAG FAGGGGGSGQ GIKQELSSAP  120
DCYPPRLAAD MQNTLDAKLL LGTLSGGGHQ PAAAAGAGHQ FYGSSAASSN SNANRGRFSQ  180
IYPTISVPSL NIEEASSLAN STSLGMNLQA LDLFNSARIN GAFVAHTSPD HQHLGFHNYG  240
FDHHHLQQSS QRPFPSNVSS PLFSHATVAI SADPKRPCNL VEPNPPQAPP KKSRLDSRAS  300
CPPFKVRKEK LGDRIAALQQ LVAPFGKTDT ASVLMEAIGY IKFLQNQVET LSVPYMKLSR  360
NKSSGRAMQG GQEENIGSEE ARRDLRSRGL CLVPLSCLSY VTDSGGGVWP PPSLEHFSPI  420
Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174118.1	0.0	PREDICTED: transcription factor bHLH110-like isoform X6
Swissprot	Q9SFZ3	6e-58	BH110_ARATH; Transcription factor bHLH110
TrEMBL	A0A1S3Z6M3	1e-103	A0A1S3Z6M3_TOBAC; transcription factor bHLH110-like
STRING	XP_009586806.1	1e-104	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7533	22	27

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G27660.1	2e-59	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]