PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000021.1_g00045.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family TALE
Protein Properties Length: 355aa    MW: 39494.8 Da    PI: 6.9207
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000021.1_g00045.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox29.51.3e-092813181954
                              HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
                 Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                              F+   ++yp+ +e+  LA+++gLt++qV++WF N R +
  Itr_sc000021.1_g00045.1 281 FQHflHPYPNDSEKLILASQTGLTKNQVSNWFINARVR 318
                              665569******************************88 PP
2BELL94.69.1e-31151222172
                     BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                              e++el++++  L+ lle V++rY+qy++ ++ ++ssFea+ag+g+ kpYt lAl+a+S+hF +L++ai++qi
  Itr_sc000021.1_g00045.1 151 EKHELHSRIMALIALLEGVERRYEQYHDRMEELVSSFEAIAGVGAGKPYTGLALQAMSKHFCSLREAIVSQI 222
                              689********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005749.5E-3187220IPR006563POX domain
PfamPF075262.3E-3892219IPR006563POX domain
PROSITE profilePS5007111.904259322IPR001356Homeobox domain
CDDcd000863.95E-11262323No hitNo description
SMARTSM003892.8E-9262326IPR001356Homeobox domain
SuperFamilySSF466892.57E-17267329IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.6E-27267328IPR009057Homeodomain-like
PfamPF059202.0E-16279318IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MVSQNSNSEP SIPHQFISPY AMTSQPQVWS QNCGDLGTNS IHSLGERMSR AVDLVHSPQA  60
RHVMDLLGSQ KLSLSLGMSV STFSGAESFA AIIANSKYLR PAQSLLEEVV SVGGKATDSS  120
NERYMRRLSP SGKKGSLGFR SMVNAELPSN EKHELHSRIM ALIALLEGVE RRYEQYHDRM  180
EELVSSFEAI AGVGAGKPYT GLALQAMSKH FCSLREAIVS QINTLLQKLS EELPTGLLDR  240
EAGLHKMFLQ QLGMIQSSRQ SWRPIRGLPE TSVATLRAWL FQHFLHPYPN DSEKLILASQ  300
TGLTKNQVSN WFINARVRLW KPMIEEMYRD EFAEESDPLL ASSGTRQSVA DSAEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-16268329566Homeobox protein Meis2
3k2a_B2e-16268329566Homeobox protein Meis2
4xrm_A2e-16268326563Homeobox protein Meis2
4xrm_B2e-16268326563Homeobox protein Meis2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019174542.10.0PREDICTED: BEL1-like homeodomain protein 11
SwissprotQ1PFD12e-88BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLA0A1U8GTI41e-134A0A1U8GTI4_CAPAN; BEL1-like homeodomain protein 11 isoform X2
STRINGXP_009592944.11e-130(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.11e-90BEL1-like homeodomain 11