PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000021.1_g00046.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

TALE

Protein Properties

Length: 530aa MW: 58993 Da PI: 5.238

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000021.1_g00046.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	29.6	1.2e-09	414	451	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +e+ LA+++gLt +qV +WF N R + Itr_sc000021.1_g00046.1 414 FEHflHPYPKDSEKVTLARQTGLTRSQVANWFINARVR 451 664459******************************88 PP
2	BELL	100.1	1.7e-32	280	351	1	72
BELL 1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 er +l++k +kL sll++Vd Ykqy+e +q+++ssFe++aglg+a+pYt+lAlk+iS +FrcL dai++qi Itr_sc000021.1_g00046.1 280 ERYDLESKMTKLFSLLDKVDMSYKQYYEHMQVLVSSFEMIAGLGAARPYTALALKTISCQFRCLCDAIKKQI 351 67899******************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	1.5E-39	202	349	IPR006563	POX domain
Pfam	PF07526	6.0E-39	208	347	IPR006563	POX domain
PROSITE profile	PS50071	12.001	392	455	IPR001356	Homeobox domain
SMART	SM00389	1.0E-9	395	459	IPR001356	Homeobox domain
CDD	cd00086	2.53E-12	395	456	No hit	No description
SuperFamily	SSF46689	2.99E-17	399	462	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.9E-28	400	461	IPR009057	Homeodomain-like
Pfam	PF05920	2.9E-17	412	451	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MATYYSGLTN QRDALPLLPD QKHTSFQSGV PGGVMFLNHP STPLAYPELS PNNNAEVQSI 60 RSGDEMLLLS PTSDLLNMQQ PVGSLLNGGS GSMEANAFSS KPFDMQNVEQ NLQYQGLSLS 120 LAMEVPSSVQ VPSYHDQYRN SGFSSLLTQG SQYNEDKSVE YLSFDLAGDH QNGVKVGAMD 180 NLESSIGLRE VNFSAHLHEA TATSAASIYN CKYLKAAQDL LDEVVNVQSA KKQADKQNHF 240 SFVQNGSEET EVKSSCSVPG MASDLQKSTD ISSAELSATE RYDLESKMTK LFSLLDKVDM 300 SYKQYYEHMQ VLVSSFEMIA GLGAARPYTA LALKTISCQF RCLCDAIKKQ IQITRQSLGE 360 QGNSQGERLY RLRHVDQQLR QQRLLQQFGV MRQPWRPLRG LPENAVSILR AWLFEHFLHP 420 YPKDSEKVTL ARQTGLTRSQ VANWFINARV RLWKPMIEEM YKEEVGDAEA GSTASPPEQI 480 RAAATEKSAS EDTADKELQE SLTGDYSCIQ QYSDVRTNNV PDHLLDASRS

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MATYYSGLTN QRDALPLLPD QKHTSFQSGV PGGVMFLNHP STPLAYPELS PNNNAEVQSI  60
RSGDEMLLLS PTSDLLNMQQ PVGSLLNGGS GSMEANAFSS KPFDMQNVEQ NLQYQGLSLS  120
LAMEVPSSVQ VPSYHDQYRN SGFSSLLTQG SQYNEDKSVE YLSFDLAGDH QNGVKVGAMD  180
NLESSIGLRE VNFSAHLHEA TATSAASIYN CKYLKAAQDL LDEVVNVQSA KKQADKQNHF  240
SFVQNGSEET EVKSSCSVPG MASDLQKSTD ISSAELSATE RYDLESKMTK LFSLLDKVDM  300
SYKQYYEHMQ VLVSSFEMIA GLGAARPYTA LALKTISCQF RCLCDAIKKQ IQITRQSLGE  360
QGNSQGERLY RLRHVDQQLR QQRLLQQFGV MRQPWRPLRG LPENAVSILR AWLFEHFLHP  420
YPKDSEKVTL ARQTGLTRSQ VANWFINARV RLWKPMIEEM YKEEVGDAEA GSTASPPEQI  480
RAAATEKSAS EDTADKELQE SLTGDYSCIQ QYSDVRTNNV PDHLLDASRS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	1e-16	401	458	1	58	Homeobox protein Meis1
4xrs_B	1e-16	401	458	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019174541.1	0.0	PREDICTED: BEL1-like homeodomain protein 7
Swissprot	Q9SIW1	1e-100	BLH7_ARATH; BEL1-like homeodomain protein 7
TrEMBL	M0ZWL9	0.0	M0ZWL9_SOLTU; Uncharacterized protein
STRING	Solyc04g080790.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11258	20	22

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G16400.1	1e-90	BEL1-like homeodomain 7

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]