PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family SBP
Protein Properties Length: 362aa    MW: 39852 Da    PI: 9.1898
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.14e-41177254178
                              --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                      SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                              +Cq+egC+adl++ak+yhrrhkvCe+hska++v+++gl+qrfCqqCsrfh l+efD++krsCr+rLa+hn+rrrk+q+
  Itr_sc000022.1_g00022.1 177 RCQAEGCNADLTHAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLTEFDNGKRSCRKRLADHNRRRRKNQQ 254
                              6**************************************************************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.108.6E-35174239IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.206175252IPR004333Transcription factor, SBP-box
SuperFamilySSF1036125.23E-38176255IPR004333Transcription factor, SBP-box
PfamPF031101.5E-30178251IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009554Biological Processmegasporogenesis
GO:0009556Biological Processmicrosporogenesis
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MLDYEWGNQS AAVMFSDETG HESDQNRQYF DPYAAAQTAF NDNQAAAATA ALVVGSNANF  60
GTGHHQFHNA QAAAAQGNAH HHHHMAAYYD PRAYGGASFG HAAAHAPLLS LEPAAPGGYM  120
VVPKSEPMVG GIEFGSSSRI GLNLGGRTYF SSAEDDFVNR LYRRSRAVDP GAVNAPRCQA  180
EGCNADLTHA KHYHRRHKVC EFHSKAATVI AAGLTQRFCQ QCSRFHLLTE FDNGKRSCRK  240
RLADHNRRRR KNQQPNQEPS TNKPHHLENP PTSSSANSFA STGVSGGFRG AFDVVGDGGG  300
FTAENFTGLF QVNGAERRRW CQQAKLIRSD HSFFWNGWLV LVFRYNAVES PGRRRALIFS  360
RE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-291782511184squamosa promoter binding protein-like 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTrans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. Binds specifically to the 5'-GTAC-3' core sequence. Involved in development and floral organogenesis. Required for ovule differentiation, pollen production, filament elongation, seed formation and siliques elongation. Also seems to play a role in the formation of trichomes on sepals. May positively modulate gibberellin (GA) signaling in flower. {ECO:0000269|PubMed:12671094, ECO:0000269|PubMed:16095614, ECO:0000269|PubMed:17093870}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00090SELEXTransfer from AT1G02065Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150373e-37AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188927.11e-166PREDICTED: squamosa promoter-binding-like protein 8
SwissprotQ8GXL33e-74SPL8_ARATH; Squamosa promoter-binding-like protein 8
TrEMBLA0A2G9HWN01e-109A0A2G9HWN0_9LAMI; Uncharacterized protein
STRINGEOX963641e-101(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA48462341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02065.12e-64squamosa promoter binding protein-like 8
Publications ? help Back to Top
  1. Jorgensen SA,Preston JC
    Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis.
    Mol. Phylogenet. Evol., 2014. 73: p. 129-39
    [PMID:24508602]
  2. Xing S, et al.
    SPL8 Acts Together with the Brassinosteroid-Signaling Component BIM1 in Controlling Arabidopsis thaliana Male Fertility.
    Plants (Basel), 2013. 2(3): p. 416-28
    [PMID:27137384]