PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000022.1_g00027.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family GATA
Protein Properties Length: 256aa    MW: 28680.6 Da    PI: 7.0285
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000022.1_g00027.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.4e-18166200135
                     GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                              C++C + kTp+WR gp g+ktLCnaCG+++++ +l
  Itr_sc000022.1_g00027.1 166 CTHCASEKTPQWRTGPLGPKTLCNACGVRFKSGRL 200
                              *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169921.7E-832254IPR016679Transcription factor, GATA, plant
PROSITE profilePS5011411.345160196IPR000679Zinc finger, GATA-type
SMARTSM004011.0E-15160210IPR000679Zinc finger, GATA-type
SuperFamilySSF577169.03E-15161223No hitNo description
Gene3DG3DSA:3.30.50.108.5E-14161197IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.97E-14165212No hitNo description
PfamPF003207.0E-16166200IPR000679Zinc finger, GATA-type
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDVYGVSAPE LFRIDDLLDF SNADIFSSAV DDSSNQHNHH HLLPHSAETT SSPADNYFFN  60
PHSSADFTHD LCVPSEDAAE LEWLSTFVED SFSDIAANST MNLSGASSAA AFQGRSRSKR  120
SRSAATGWTA AMQPPPQETV THHEISSNKH GANKKRESPE DVPRRCTHCA SEKTPQWRTG  180
PLGPKTLCNA CGVRFKSGRL VPEYRPAASP TFVLTQHSNS HRKVLELRRQ KELFRQQQQQ  240
QQQQQQEMYG RHFQVC
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114119RSRSKR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019188940.11e-144PREDICTED: GATA transcription factor 4-like
SwissprotO497413e-73GATA2_ARATH; GATA transcription factor 2
TrEMBLA0A1U8EFW61e-93A0A1U8EFW6_CAPAN; GATA transcription factor
TrEMBLA0A2G3AMG31e-93A0A2G3AMG3_CAPAN; GATA transcription factor
TrEMBLA0A2G3DJC61e-93A0A2G3DJC6_CAPCH; GATA transcription factor
STRINGPGSC0003DMT4000669536e-93(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA57761935
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.18e-68GATA transcription factor 4
Publications ? help Back to Top
  1. Jiang K,Yung V,Chiba T,Feldman LJ
    Longitudinal patterning in roots: a GATA2-auxin interaction underlies and maintains the root transition domain.
    Planta, 2018. 247(4): p. 831-843
    [PMID:29249045]