PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000024.1_g00022.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family WRKY
Protein Properties Length: 345aa    MW: 38261.7 Da    PI: 4.9095
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000024.1_g00022.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.17.6e-28128189159
                              ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                     WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                              ldDg++WrKYGqK++ g+++pr+YYrCt++   gC ++k+v+rs+ d +v+e+tY+g+H ++
  Itr_sc000024.1_g00022.1 128 LDDGHSWRKYGQKDILGAHHPRAYYRCTHRntqGCLATKQVQRSDGDASVFEVTYKGRHSCK 189
                              59***************************98889*************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-26125189IPR003657WRKY domain
SuperFamilySSF1182901.31E-24128190IPR003657WRKY domain
SMARTSM007745.9E-40128190IPR003657WRKY domain
PROSITE profilePS5081122.894128191IPR003657WRKY domain
PfamPF031061.8E-25129189IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEKVGVLEGN SLIINELTQG RELAAQLKGQ FDSFTSPEIC EPLVEKILSS YEKALTLLNF  60
KLFFGGDPNA MDSPLPLLAN NSNVCPTGEA SDGDSSKEQC HVFKKRKTSP QWSKQVRVCS  120
ATGLGANLDD GHSWRKYGQK DILGAHHPRA YYRCTHRNTQ GCLATKQVQR SDGDASVFEV  180
TYKGRHSCKA SHPALISGEN ERPKPQFQVQ QPEGKQLQAQ SLVLDYGLNQ KLETTEEDHV  240
LPPFSFPPTI KCEVADKENN LLKCCSPSPF TAPSTSEECM YLSFLPGQND DDDFGLSQIL  300
DRSESDLTDH MISTPTSVTN SPFQDWDFLA DQPNLDATDI SKYFS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A7e-21127189769OsWRKY45
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019191164.10.0PREDICTED: probable WRKY transcription factor 46
TrEMBLA0A314KJ536e-91A0A314KJ53_NICAT; Putative wrky transcription factor 41
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA55532237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.16e-44WRKY family protein