PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000025.1_g00007.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 368aa    MW: 39664 Da    PI: 5.997
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000025.1_g00007.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.42.3e-20184233255
                      AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                               y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAa a+++a+ +l+g
  Itr_sc000025.1_g00007.1 184 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAALAYDKAAYQLRG 233
                              59******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.06E-33183243No hitNo description
SMARTSM003803.6E-38184247IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-23184242IPR016177DNA-binding domain
PROSITE profilePS5103223.037184241IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.5E-32184242IPR001471AP2/ERF domain
PRINTSPR003673.6E-11185196IPR001471AP2/ERF domain
PfamPF008474.6E-14185233IPR001471AP2/ERF domain
PRINTSPR003673.6E-11207223IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAASMWSSST GVDEAFNGGG ELMEALEPFM IKTASPLLPP PNPPSSLFPS ETSSFYPSSF  60
SFSSPSVSYP YGYGYDYSGF GSSAPAITTS DGCSTSDTHM FSSQGSSGFG FEQPGCIGLN  120
QLTPTQINQI EVHMNLPAGH GMSSGPFQGQ WAQQQSHQGQ TVSFLGPRGV PMKQSASAPK  180
PTKLYRGVRQ RHWGKWVAEI RLPKNRTRLW LGTFDTAEEA ALAYDKAAYQ LRGDLARLNF  240
PHLRHNGSLI GGDFGEYKPL HSSVDAKLQA ICKNLAQGKS IDSKKSKGST SSSPKQPKVK  300
EEEVEEKSKA VELGSDSSGS GGASGESSPV SDLTFPEFTG EDSTWDMCSD LHKFPSYEID  360
WESLSHLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-21183241160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019175006.11e-179PREDICTED: ethylene-responsive transcription factor RAP2-13-like
TrEMBLA0A1S4D1L31e-115A0A1S4D1L3_TOBAC; ethylene-responsive transcription factor RAP2-4-like
STRINGXP_009615540.11e-116(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA16102471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.12e-58related to AP2 4