PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000026.1_g00055.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family C2H2
Protein Properties Length: 194aa    MW: 20398.4 Da    PI: 9.5076
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000026.1_g00055.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00145375123
                             EEETTTTEEESSHHHHHHHHHHT CS
                  zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                             ++C+ C++ Fs+   L  H  +H
  Itr_sc000026.1_g00055.1 53 FECKTCNRQFSSFQALGGHRASH 75
                             89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.65E-951126No hitNo description
PfamPF139123.8E-125277IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.4085380IPR007087Zinc finger, C2H2
SMARTSM003550.25375IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002805575IPR007087Zinc finger, C2H2
PfamPF139127.1E-10103128IPR007087Zinc finger, C2H2
PROSITE profilePS501578.912104126IPR007087Zinc finger, C2H2
SMARTSM003550.5104126IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280106126IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MANPFMMKRA RDEFDHHVTT VANGLMLLSG GGGDRQGDSY LTMSSGDLCG RVFECKTCNR  60
QFSSFQALGG HRASHKRPRM MTATAAGEAA ALLPPSSPPK PKTHECSICG LEFAIGQALG  120
GHMRRHRAAG NDAALSGGAG DSLALSPPGG HGGVPVVKKP SSGRRVLCVD LNLTPLENDR  180
LEFIKFGKVA GLMV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019150880.11e-103PREDICTED: zinc finger protein ZAT12-like
TrEMBLO220862e-56O22086_PETHY; ZPT2-14
STRINGXP_009757271.15e-56(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA36624150
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37430.12e-30C2H2 family protein