PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000030.1_g00037.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family ERF
Protein Properties Length: 317aa    MW: 34960.5 Da    PI: 4.596
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000030.1_g00037.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2643e-20117167155
                      AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                              ++++GVr+++ +grW+AeIrdp+    r kr++lg+f+t+eeAa+ +++a+  l+g
  Itr_sc000030.1_g00037.1 117 KKFRGVRQRP-WGRWAAEIRDPT----RgKRVWLGTFDTPEEAAAVYDRAAVLLKG 167
                              59********.**********84....35*********************987766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.80E-31117175No hitNo description
Gene3DG3DSA:3.30.730.102.6E-30118176IPR001471AP2/ERF domain
PROSITE profilePS5103223.644118175IPR001471AP2/ERF domain
SuperFamilySSF541713.33E-22118176IPR016177DNA-binding domain
SMARTSM003808.8E-37118181IPR001471AP2/ERF domain
PfamPF008478.3E-13118162IPR001471AP2/ERF domain
PRINTSPR003675.1E-10119130IPR001471AP2/ERF domain
PRINTSPR003675.1E-10141157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MVDERVEFSD SPVTLRAPVK FSEHWVASKK PVRQIGESPA RIRRKVRIVV TDGDATDSSD  60
DEEERVGRRV KRYVTEISFV PPAKPARMEA ASPVQVGKKR GFDGGLGSPE GDVSSRKKFR  120
GVRQRPWGRW AAEIRDPTRG KRVWLGTFDT PEEAAAVYDR AAVLLKGADA VTNFPRVTVT  180
ETTAVEGPKD DANAALSPTS VFRFDDVTPS DSQPNGDVST NDTSAKSDVS TNDIPENSDV  240
STNDIPENSD VSRNDAALSP TSVLRFDGFT AFDNFPLVDL DSFGFDFDFS FHSPGFEKHI  300
ADEFGEFNFD DFALEVR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-20117175463ATERF1
3gcc_A6e-20117175463ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14046RIRRKVR
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Activates the defense genes of plants. {ECO:0000269|PubMed:11971137}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019167120.11e-177PREDICTED: pathogenesis-related genes transcriptional activator PTI6-like
SwissprotO046821e-46PTI6_SOLLC; Pathogenesis-related genes transcriptional activator PTI6
TrEMBLA0A484NG803e-76A0A484NG80_9ASTE; Uncharacterized protein
STRINGXP_009767000.18e-76(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52272137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-42cytokinin response factor 4