PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000031.1_g00012.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family bHLH
Protein Properties Length: 826aa    MW: 91407 Da    PI: 6.7549
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000031.1_g00012.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.8e-09210257455
                              HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                      HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                              +h+ +Er RR++iN ++  L+el+P +    +k    a++L + ++++++Lq
  Itr_sc000031.1_g00012.1 210 SHSLAERARREKINARMKLLQELVPGC----NKISGTAMVLDEIINHVQYLQ 257
                              8*************************9....89999***************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.5E-15204275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.62E-9204261No hitNo description
PROSITE profilePS5088814.551206256IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-15206274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.6E-7210257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.4E-9212262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF511262.46E-71386754IPR011050Pectin lyase fold/virulence factor
Gene3DG3DSA:2.160.20.104.6E-79391749IPR012334Pectin lyase fold
PfamPF002953.5E-23468746IPR000743Glycoside hydrolase, family 28
SMARTSM0071015560586IPR006626Parallel beta-helix repeat
SMARTSM00710840587608IPR006626Parallel beta-helix repeat
SMARTSM007104600667689IPR006626Parallel beta-helix repeat
SMARTSM007109000704729IPR006626Parallel beta-helix repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005975Biological Processcarbohydrate metabolic process
GO:0005774Cellular Componentvacuolar membrane
GO:0004650Molecular Functionpolygalacturonase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 826 aa     Download sequence    Send to blast
MESIEGAEVR SVLCGTEHGE NGVGAQQFGD DGGLHGMMTV PPPETGSSFT ALLELPANQA  60
VELLVHSPET ENLPATKVPE IEPRRNFYPR CPPPPPIFPS DIALIDRASK FSVFAGNSPE  120
TTSIPSNSSW KPNFVKPEPL DSDSNPNSSP AVSNPAVNQN QKSTKRKDRE KKVKESSKKN  180
KKSANNTSED GDDKCPYVHV RARRGQATDS HSLAERARRE KINARMKLLQ ELVPGCNKIS  240
GTAMVLDEII NHVQYLQRQV EFLSMRLAAV NPRIDFNVDT LFGAETGSPV ESNFPGMIMP  300
SMWPEGQANG NRQPYQQLWH FNGLHRPVWG REDENSLLTY DSTNPAKDGA MKSKMLSIRF  360
SFGVFVLSLA VQLYSATSRF SILEGSHEPL SFSVAQFGAT GDGVHYDTVA IQKAIDECAA  420
AVVSSRHRPC HVTFPPGKYL TATVHLKSGV VLDISRNATI LGGPRLRDYP EEQSRWYVVL  480
AEGADDVGIT GGGEINGQGL KFVQRFDERK NVMVSWNQTG ACLGDECRPR LVGFIGCRNV  540
KIWNVSLIEP ALWCLHLVRS DSISIHDVTI YGNFNSPNND GIDIEDSNNT LITRCHIDTG  600
DDAICPKSST GPVYNLTATN CWIRTKSCAI KLGSASFYTF KNFVFDNITI VESHRGLGLQ  660
IRDGGNVSDI TFSNINISTR YYDPLWWGRA EPIYVTTCPR DASSKAGFIS NMQFVNITST  720
SENGVFLSGY GGGLLSHLKF TNMNLTFKRW TNYSDGMLDY RPGCKDLVNH QTAGFMMEHI  780
DGLELENVSM RWSKDPALKW NNPLDFRPST VNNISLLNFL SKPFQE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3jur_A5e-1939367229343Exo-poly-alpha-D-galacturonosidase
3jur_B5e-1939367229343Exo-poly-alpha-D-galacturonosidase
3jur_C5e-1939367229343Exo-poly-alpha-D-galacturonosidase
3jur_D5e-1939367229343Exo-poly-alpha-D-galacturonosidase
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019187313.10.0PREDICTED: probable polygalacturonase
TrEMBLA0A1S3WZN50.0A0A1S3WZN5_TOBAC; exopolygalacturonase-like isoform X1
STRINGXP_009799758.10.0(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.29e-71bHLH family protein