PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Itr_sc000031.1_g00032.1
Organism
Ipomoea trifida
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea
Family NF-YA
Protein Properties Length: 276aa    MW: 30456.6 Da    PI: 7.7425
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Itr_sc000031.1_g00032.1genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA98.66.4e-31161217158
                CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                              +ep+YVNaKQy++Il+RRq Rak+e e+k+  k+rkpylheSRh hA+rR+R  gGrF
  Itr_sc000031.1_g00032.1 161 EEPVYVNAKQYHGILRRRQLRAKAELENKV-VKNRKPYLHESRHLHAMRRARDGGGRF 217
                              69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.6E-35159220IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.25160220IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-27162217IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006167.4E-23163185IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860165185IPR018362CCAAT-binding factor, conserved site
PRINTSPR006167.4E-23194217IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MASDAMSSGA TPASSCTIGS LAWCQAMVSR NAWNNTYENS SASPSVGPGN ETSAHMLWED  60
NGGMHHTATD PKGFRELHTS DKNCKVESEN VARAMSPTTR DHHYSRPATE HDLMGHSIQC  120
ASYPYTEPAA FLGAAGESVV HQTAQGGHHG RMVLPLEVTT EEPVYVNAKQ YHGILRRRQL  180
RAKAELENKV VKNRKPYLHE SRHLHAMRRA RDGGGRFVNT KKSDSTSNTT PCSSNSSEAN  240
KYSDSHGSEA SGMQGADQYV QWGYEYQHFK VMKDWV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-22160233174NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019186694.11e-156PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
RefseqXP_019186695.11e-156PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X1
TrEMBLA0A061EY162e-45A0A061EY16_THECC; Nuclear factor Y, putative
STRINGEOY093124e-46(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA133921516
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.41e-33nuclear factor Y, subunit A1