PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Itr_sc000032.1_g00012.1

Organism

Ipomoea trifida

Taxonomic ID

35884

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Convolvulaceae; Ipomoeeae; Ipomoea

Family

C2H2

Protein Properties

Length: 178aa MW: 20503.9 Da PI: 4.9539

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Itr_sc000032.1_g00012.1	genome	Kazusa	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	13.5	0.00021	33	55	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C++ F++ L H++ H Itr_sc000032.1_g00012.1 33 YECAFCKRGFTNAQALGGHMNIH 55 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.4E-4	31	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	1.19E-6	31	60	No hit	No description
PROSITE profile	PS50157	11.074	33	60	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	35	55	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MEVDKYTTNT SSDTSSEDSD HRPEDNVGVG RSYECAFCKR GFTNAQALGG HMNIHRKDKL 60 KAAKQNNISH HQQQQSPPRK PNYDQQYSDT RAGWATAQLS YQFNYSPPSN PSYQQVYYHH 120 TRMYGDFMGA NNDLSLRVGP SNVEDDEDEG RKEESDDDEE ETTDEVDLEL RLGRHKYR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019163595.1	3e-73	PREDICTED: transcriptional regulator SUPERMAN-like
TrEMBL	A0A1U8GA01	1e-40	A0A1U8GA01_CAPAN; Uncharacterized protein
TrEMBL	A0A2G2VTN8	1e-40	A0A2G2VTN8_CAPBA; Putative transcriptional regulator RABBIT EARS
TrEMBL	A0A2G2YL98	1e-40	A0A2G2YL98_CAPAN; transcriptional regulator TAC1
STRING	XP_009613300.1	8e-36	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA2136	21	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	2e-15	C2H2 family protein